Hg_chrom6_TN10mRNA_12007
Organism: Heterodera glycines Gene Locus: chr6:5059796-5060819 Feature type: polypeptideProtein Sequence
Length: 267
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.74 | 1.219 | 1.158 | 0.387 | 1.124 | 0.96 | 0.312 | 2.622 | 1.082 | 0.86 | 1.248 | 1.542 | 1.769 | 0.864 | 1.987 | 1.017 | 1.044 | 0.34 | 0.864 | 0.881 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11326
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
RKKR,KKMHDEVMERRRRST,RRRSTTIPMFDELQRDKQK,RRSTTIPMFDELQRDKQKR
|
— | — |
2-42
|
0.979
|
— | — |
0.000
|
— | — |
0.143
|
0.876
|
0.031
|
0.151
|
0.313
|
0.020
|
0.051
|
0.023
|
0.052
|
0.023
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010449
|
1.000
|
1.000
|
Hsc_gene_7390.t1
|
Hsc_gene_7390.t1
|
— |
Q03FR6.1 Chaperone protein DnaJ [Pediococcus pentosaceus ATCC 25745]
|
KAF7632397.1 J domain-containing protein [Meloidogyne graminicola];KAF7632398.1 J domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.260
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.886|GO:0110165_0.885|GO:0016020_0.822|GO:0005622_0.804|GO:0043226_0.764|GO:0043229_0.744|GO:0043227_0.708|GO:0043231_0.708|GO:0008150_0.702|GO:0005737_0.691|GO:0009987_0.629|GO:0003674_0.576
|
IPR001623+49-108_50-104_50-113_50-116_52-70_70-85_88-108+|IPR036869+34-129_47-124+|IPR051938+41-243+
|
SM00271+49-108+
|
PF00226+50-113+DnaJ_domain
|
— |
PTHR44145+41-243+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
105-159
|
2.000
|
1-104;160-267
|
2dn9_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.677
|
31707.810
|
10.204
|
20.000
|
36.330
|
15.730
|
58.801
|
41.199
|
23.221
|
13.109
|
41.948
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
506.567
|
547.213
|
331.006
|
263.974
|
327.506
|
309.668
|
449.593
|
376.417
|
805.718
|
634.927
|
708.123
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.957
|
-1.189
|
-0.216
|
0.279
|
— |
0.549
|
— |
0.400
|
— | — | — | — | — |
No JSON data available for plots.