SCN Proteipedia

Hg_chrom6_TN10mRNA_12009

Organism: Heterodera glycines Gene Locus: chr6:5063039-5065582 Feature type: polypeptide

Protein Sequence

Length: 528

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.749	0.705	0.861	0.392	1.199	0.923	0.767	1.136	1.305	1.024	1.492	1.448	0.21	1.093	1.16	1.082	1.273	1.177	0.728	0.947	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11328	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	11-Not_Clustered	0.930

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KVKK,RKWGLGPVASKKKAM	—	—	—	—	—	—	0.000	—	—	0.831	0.116	0.004	0.439	0.063	0.044	0.095	0.008	0.051	0.044

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010451	1.000	1.000	Hsc_gene_7388.t1	Hsc_gene_7388.t1	—	Q60YA8.1 Putative H/ACA ribonucleoprotein complex subunit 4 [Caenorhabditis briggsae]	KAI1731845.1 DKCLD domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0001522\|GO:0003723\|GO:0006396\|GO:0009451\|GO:0009982	GO:0005575_0.881\|GO:0110165_0.873\|GO:0005622_0.793\|GO:0008150_0.742\|GO:0016020_0.739\|GO:0009987_0.707\|GO:0043226_0.686\|GO:0043229_0.661\|GO:0043227_0.616\|GO:0043231_0.606\|GO:0005634_0.520\|GO:0008152_0.510\|GO:0044238_0.505\|GO:0043170_0.504\|GO:0044237_0.504	IPR002478+281-354_281-355+\|IPR002501+94-210+\|IPR004521+270-350+\|IPR004802+3-493_40-365+\|IPR012960+32-90_34-90+\|IPR015947+280-360+\|IPR020103+36-277+\|IPR032819+211-277+\|IPR036974+34-364+	SM00359+281-355+\|SM01136+32-90+	PF01472+281-354+PUA_domain\|PF01509+94-210+TruB_family_pseudouridylate_synthase_(N_terminal_domain)\|PF08068+34-90+DKCLD_(NUC011)_domain\|PF16198+211-277+tRNA_pseudouridylate_synthase_B_C-terminal_domain	G3DSA:3.30.2350.10:FF:000001+66-272+H/ACA_ribonucleoprotein_complex_subunit_CBF5	PTHR23127+3-493+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-30;375-528	1.000	31-374	9qb3_g	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.838	58673.370	9.889	25.000	29.735	7.197	51.705	48.295	17.803	11.932	50.568

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	yellow	2228.783	3087.394	1719.307	3699.431	3607.374	2671.173	3495.122	1292.847	1978.128	927.588	1377.820

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.074	0.124	1.214	—	-0.418	0.399	-1.151	1.578	—	—	—	—	—

No JSON data available for plots.

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