Hg_chrom6_TN10mRNA_12011
Organism: Heterodera glycines Gene Locus: chr6:5069963-5070669 Feature type: polypeptideProtein Sequence
Length: 150
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.62 | 0.93 | 1.091 | 0.23 | 2.444 | 1.197 | 1.349 | 0.667 | 0.444 | 0.901 | 0.909 | 1.961 | 1.296 | 0.128 | 1.224 | 0.476 | 0.656 | 1.616 | 1.026 | 0.98 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11330
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.871
|
0.117
|
0.012
|
0.564
|
0.074
|
0.138
|
0.086
|
0.001
|
0.045
|
0.069
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010453
|
1.000
|
1.000
|
Hsc_gene_7386.t1
|
Hsc_gene_7386.t1
|
— |
Q27W01.1 RNA-binding protein 8A [Rattus norvegicus]
|
KAI1725351.1 RNA recognition motif domain-containing protein [Ditylenchus destructor]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723|GO:0003729|GO:0005634|GO:0005737|GO:0006396
|
GO:0005575_0.838|GO:0110165_0.832|GO:0005622_0.742|GO:0008150_0.725|GO:0016020_0.671|GO:0009987_0.641|GO:0043226_0.635|GO:0003674_0.634|GO:0043229_0.628|GO:0008152_0.593|GO:0043227_0.587|GO:0005737_0.586|GO:0043231_0.561|GO:0005488_0.559|GO:0044237_0.552|GO:0009058_0.532|GO:0043170_0.532|GO:0044249_0.512|GO:0009059_0.501
|
IPR000504+64-142_65-138_66-136+|IPR008111+8-148_23-35_55-69_111-127_129-141+|IPR012677+5-150+|IPR033744+58-144+|IPR035979+52-146+
|
SM00360+65-138+
|
PF00076+66-136+RNA_recognition_motif
|
— |
PTHR45894+8-148+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-18
|
1.000
|
19-150
|
9fmd_8
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.908
|
17021.920
|
4.314
|
-12.000
|
34.000
|
10.667
|
50.000
|
50.000
|
13.333
|
20.667
|
46.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
yellow
|
4026.869
|
2453.976
|
2608.477
|
3336.442
|
3529.968
|
2778.259
|
2091.511
|
2242.188
|
5440.481
|
6396.882
|
5986.996
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.142
|
0.306
|
0.464
|
— |
-0.331
|
-0.398
|
-0.413
|
— | — | — | — | — | — |
No JSON data available for plots.