Hg_chrom6_TN10mRNA_12013
Organism: Heterodera glycines Gene Locus: chr6:5074393-5076213 Feature type: polypeptideProtein Sequence
Length: 339
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.652 | 0.892 | 1.234 | 0.814 | 0.983 | 0.605 | 1.018 | 0.885 | 0.787 | 1.395 | 0.849 | 0.694 | 1.557 | 1.021 | 1.806 | 1.306 | 0.387 | 0.983 | 1.135 | 0.868 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11332
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_Clustered
|
0.430
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum|golgi_apparatus
|
— |
KAKRRK,RKSLLANDGLKRRRREQ,KRRRREQNYANGKLARK
|
74-97
|
0.881
|
— | — | — | — |
0.000
|
— | — |
0.196
|
0.279
|
0.080
|
0.178
|
0.878
|
0.298
|
0.681
|
0.200
|
0.047
|
0.134
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010455
|
1.000
|
1.000
|
Hsc_gene_7384.t2
|
Hsc_gene_7384.t1;Hsc_gene_7384.t2
|
— |
Q9XXA7.1 Neuferricin homolog [Caenorhabditis elegans]
|
KAH7731734.1 Cytochrome b5-like Heme/Steroid binding domain containing protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.887|GO:0110165_0.887|GO:0008150_0.730|GO:0016020_0.656|GO:0003674_0.636|GO:0009987_0.626|GO:0005622_0.616|GO:0043226_0.599|GO:0005488_0.570|GO:0043229_0.561|GO:0043227_0.544|GO:0043231_0.522|GO:0005737_0.517
|
IPR001199+115-211_120-175+|IPR036400+108-211_111-210+|IPR050577+25-270+
|
SM01117+115-211+
|
PF00173+120-175+Cytochrome_b5-like_Heme/Steroid_binding_domain
|
— |
PTHR10281+25-270+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-339
|
1t0g_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.897
|
38169.380
|
8.640
|
9.000
|
28.909
|
11.799
|
46.608
|
53.392
|
16.224
|
12.684
|
50.442
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
735.776
|
445.605
|
931.608
|
561.097
|
473.239
|
674.172
|
955.322
|
1505.982
|
483.560
|
776.217
|
650.793
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.835
|
0.195
|
-0.623
|
-0.278
|
0.525
|
0.511
|
1.056
|
-0.516
|
— | — | — | — | — |
No JSON data available for plots.