SCN Proteipedia

Hg_chrom6_TN10mRNA_12015

Organism: Heterodera glycines Gene Locus: chr6:5078905-5087077 Feature type: polypeptide

Protein Sequence

Length: 1,104

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.98	1.222	0.955	0.531	1.178	1.277	0.938	0.725	1.006	1.408	0.714	1.545	1.132	0.801	1.46	1.048	0.832	0.865	0.627	0.453	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11334	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	0.982

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	RRGGGKPKKRGLSVKRKMS	—	—	—	—	—	—	0.000	—	—	0.320	0.194	0.056	0.635	0.263	0.554	0.231	0.020	0.473	0.093

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004378	2.000	1.000	Hsc_gene_7382.t1	Hsc_gene_7382.t1	—	Q3USB7.3 Inactive phospholipase C-like protein 1 [Mus musculus]	KAI1725379.1 phosphatidylinositol-specific phospholipase c, X domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004435\|GO:0005509\|GO:0006629\|GO:0007165\|GO:0008081\|GO:0035556	GO:0008150_0.792\|GO:0005575_0.773\|GO:0110165_0.769\|GO:0009987_0.738\|GO:0003674_0.678\|GO:0065007_0.613\|GO:0005622_0.568\|GO:0050789_0.556\|GO:0016020_0.510\|GO:0050794_0.510	IPR000008+691-820_711-813_711-818+\|IPR000909+371-519_373-517+\|IPR001192+63-839_376-394_402-422_503-520_615-636_636-654_804-814+\|IPR001711+563-677_587-674_589-676+\|IPR001849+64-178+\|IPR002048+201-236+\|IPR011992+202-370+\|IPR011993+61-182+\|IPR015359+281-363+\|IPR017946+367-685_371-678+\|IPR035892+706-864_711-837+	SM00148+371-519+\|SM00149+563-677+\|SM00239+711-818+	PF00168+711-813+C2_domain\|PF00387+587-674+Phosphatidylinositol-specific_phospholipase_C,_Y_domain\|PF00388+373-517+Phosphatidylinositol-specific_phospholipase_C,_X_domain\|PF09279+281-363+Phosphoinositide-specific_phospholipase_C,_efhand-like\|PF16457+64-178+Pleckstrin_homology_domain	G3DSA:1.10.238.10:FF:000005+283-367+Phosphoinositide_phospholipase_C\|G3DSA:2.30.29.30:FF:000025+60-183+Phosphoinositide_phospholipase_C	PTHR10336+63-839+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-50;1073-1104	1.000	51-1072	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.744	121931.380	6.806	3.000	25.634	7.880	48.279	51.721	13.315	12.319	50.634

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	greenyellow	1857.614	2607.729	2730.574	1259.547	644.428	551.245	1114.208	1118.720	938.210	3663.485	2495.510

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.163	-1.187	-1.007	-0.998	—	1.027	0.921	—	—	—	-2.209	—	—

No JSON data available for plots.

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