Hg_chrom6_TN10mRNA_12017
Organism: Heterodera glycines Gene Locus: chr6:5092569-5096341 Feature type: polypeptideProtein Sequence
Length: 1,135
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.656 | 0.615 | 0.801 | 0.76 | 3.113 | 1.039 | 0.871 | 0.396 | 0.724 | 0.56 | 2.283 | 1.244 | 0.441 | 0.407 | 2.086 | 0.617 | 0.809 | 0.414 | 1.355 | 0.596 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11335
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
nucleus
|
KRQK,RKKR,RKRK,RRKR,RRRK,KKKKK,QKRKK,KKSCSPEKLVKEKKEKL,KRSGGGEEKGIQKRRERT,KKKERKEKMEGEKKKREE,KKRTMKQMAKVAVKGVRRR,KRTMKQMAKVAVKGVRRRE,KKVPTSVRELKLYCKYRKS,KKQKKSCSPEKLVKEKKEK,KKDEGEEASSVKEDEKKRE,KKAEEEEKEKMRKKSKRRK,KKKREEEKEEMEEEEKKRE,KKREEEKEEMEEEEKKREE,RKGHEKQTEDEEKPKRISK,RKWQGLSKEERLECRYRKS,RNRRKEAKQREKPKKVADITRKTKARETDKRKG
|
— | — | — | — | — |
0.584
|
0.148
|
0.000
|
— |
0.432
|
0.062
|
0.011
|
0.553
|
0.062
|
0.032
|
0.105
|
0.014
|
0.132
|
0.465
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002321
|
1.000
|
3.000
|
Hsc_gene_7380.t1;Hsc_gene_7380.t2;Hsc_gene_7380.t3
|
— | — | — |
XP_045096424.1 Protein CBG18254 [Caenorhabditis briggsae];CAP35735.2 Protein CBG18254 [Caenorhabditis briggsae]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
145-293;498-1135
|
2.000
|
1-144;294-497
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.641
|
133707.800
|
9.033
|
29.500
|
49.163
|
6.167
|
65.110
|
34.890
|
26.079
|
23.084
|
36.300
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
4144.273
|
5579.508
|
20890.813
|
1251.969
|
213.627
|
3047.959
|
170.208
|
10378.326
|
1534.459
|
1405.696
|
1460.880
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.675
|
-2.294
|
-3.952
|
-2.581
|
3.848
|
-4.151
|
1.665
|
-5.787
|
— | — | — | — | — |