Hg_chrom6_TN10mRNA_12020
Organism: Heterodera glycines Gene Locus: chr6:5101345-5106421 Feature type: polypeptideProtein Sequence
Length: 1,031
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.733 | 1.218 | 0.723 | 0.401 | 2.651 | 1.716 | 0.439 | 0.921 | 0.905 | 1.271 | 1.543 | 1.54 | 0.485 | 0.317 | 1.366 | 1.081 | 0.859 | 0.661 | 0.522 | 0.285 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11338
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.859
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|golgi_apparatus
|
— |
KRHGEILTEQLKKKDE,RKETELLKKEWDRAKQK,KREMNLEMEAIKKERDGRK,KKEGEKEAQKGEEILRRAEKEK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.229
|
0.141
|
0.055
|
0.690
|
0.201
|
0.450
|
0.685
|
0.086
|
0.187
|
0.059
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010457
|
1.000
|
1.000
|
Hsc_gene_7378.t1
|
Hsc_gene_7378.t1
|
— | — |
KAI1725374.1 GRIP domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.956|GO:0110165_0.951|GO:0005622_0.943|GO:0043226_0.903|GO:0043229_0.884|GO:0016020_0.878|GO:0043227_0.818|GO:0005737_0.805|GO:0043231_0.766|GO:0005886_0.743|GO:0071944_0.743|GO:0008150_0.612|GO:0005773_0.607|GO:0012505_0.603|GO:0009987_0.578|GO:0005794_0.553|GO:0065007_0.550|GO:0050789_0.548|GO:0050794_0.528|GO:0003674_0.527|GO:0005488_0.527|GO:0071840_0.516|GO:0005515_0.512|GO:0016043_0.508
|
IPR000237+918-970_921-970_924-964+
|
SM00755+921-970+
|
PF01465+924-964+GRIP_domain
|
— |
PTHR19327+913-978+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-131;263-916;991-1031
|
2.000
|
132-262;917-990
|
1upt_H
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.665
|
119000.390
|
5.236
|
-21.500
|
38.603
|
5.238
|
63.337
|
36.663
|
18.720
|
19.884
|
39.185
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
2448.285
|
1873.714
|
1712.391
|
1713.689
|
1950.738
|
2547.456
|
2033.445
|
2020.462
|
4144.070
|
2408.733
|
3152.449
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.360
|
-0.266
|
0.110
|
0.155
|
0.399
|
-0.315
|
-0.438
|
— | — | — | — | — | — |
No JSON data available for plots.