Hg_chrom6_TN10mRNA_12021
Organism: Heterodera glycines Gene Locus: chr6:5106728-5107850 Feature type: polypeptideProtein Sequence
Length: 237
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.883 | 1.374 | 0.767 | 1.309 | 1.266 | 0.541 | 1.306 | 0.633 | 1.875 | 1.368 | 1.151 | 0.993 | 1.641 | 0.243 | 0.603 | 0.784 | 0.623 | 0.767 | 0.974 | 0.869 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11339
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.987
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.557
|
0.293
|
0.055
|
0.655
|
0.200
|
0.116
|
0.129
|
0.022
|
0.054
|
0.060
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010458
|
1.000
|
1.000
|
Hsc_gene_7377.t1
|
Hsc_gene_7377.t1
|
— |
Q4KM84.1 Histidine protein methyltransferase 1 homolog [Rattus norvegicus]
|
KAI1725373.1 lysine methyltransferase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.884|GO:0110165_0.882|GO:0005622_0.792|GO:0005737_0.761|GO:0008150_0.760|GO:0003674_0.707|GO:0016020_0.696|GO:0043226_0.632|GO:0008152_0.627|GO:0043229_0.618|GO:0009987_0.617|GO:0043227_0.602|GO:0043231_0.598|GO:0003824_0.576|GO:0043170_0.556|GO:0044237_0.527|GO:0065007_0.517|GO:0009058_0.515|GO:0050789_0.502
|
IPR019410+49-212_51-189+|IPR029063+40-225_48-191+
|
— |
PF10294+51-189+Lysine_methyltransferase
|
— |
PTHR14614+49-212+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-237
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.662
|
26022.010
|
5.775
|
-1.500
|
23.629
|
11.392
|
40.928
|
59.072
|
11.814
|
11.814
|
48.101
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
darkorange
|
240.775
|
235.744
|
257.795
|
203.715
|
142.754
|
150.813
|
314.322
|
194.056
|
155.968
|
374.218
|
280.682
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.348
|
-0.230
|
-0.545
|
— |
1.069
|
— |
0.839
|
— | — | — | — | — |
No JSON data available for plots.