Hg_chrom6_TN10mRNA_12023
Organism: Heterodera glycines Gene Locus: chr6:5111336-5112637 Feature type: polypeptideProtein Sequence
Length: 200
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.698 | 0.814 | 1.364 | 0.69 | 1.333 | 0.641 | 0.833 | 0.75 | 1.333 | 1.216 | 0.833 | 1.471 | 1.389 | 0.385 | 1.735 | 0.929 | 1.066 | 1.061 | 1.154 | 0.588 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11341
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.921
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
lysosome_vacuole
|
— |
RRMVSREEGLQFAKKHRM
|
— | — | — | — | — | — |
0.000
|
— | — |
0.168
|
0.188
|
0.028
|
0.256
|
0.204
|
0.669
|
0.459
|
0.069
|
0.411
|
0.013
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004375
|
2.000
|
1.000
|
Hsc_gene_7375.t1
|
Hsc_gene_7375.t1
|
— |
Q6DHC1.1 Ras-related protein Rab-18-B [Danio rerio]
|
KAI1731866.1 ras family domain-containing protein [Ditylenchus destructor]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003924|GO:0005525
|
GO:0005575_0.894|GO:0110165_0.889|GO:0005622_0.777|GO:0008150_0.768|GO:0005737_0.659|GO:0016020_0.653|GO:0071944_0.652|GO:0043226_0.647|GO:0009987_0.640|GO:0043229_0.635|GO:0005886_0.634|GO:0043227_0.562|GO:0006810_0.543|GO:0051179_0.543|GO:0051234_0.543|GO:0043231_0.526|GO:0003674_0.517
|
IPR001806+6-200_12-172_13-174+|IPR005225+10-166+|IPR027417+2-183_10-181+|IPR050227+11-174+
|
SM00173+8-174+|SM00174+13-174+|SM00175+11-174+|SM00176+16-199+|SM00177+2-175+
|
PF00071+12-172+Ras_family
|
G3DSA:3.40.50.300:FF:000430+3-188+Probable_Ras-related_protein_Rab-18
|
PTHR47977+11-174+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-200
|
1x3s_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.523
|
22746.890
|
5.790
|
-1.500
|
31.000
|
10.000
|
50.000
|
50.000
|
15.500
|
15.500
|
48.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
grey
|
501.026
|
425.551
|
479.754
|
438.323
|
587.201
|
773.123
|
1160.925
|
727.544
|
97.917
|
396.392
|
268.474
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
0.390
|
0.411
|
0.598
|
— |
0.818
|
— | — | — | — | — |
No JSON data available for plots.