Hg_chrom6_TN10mRNA_12024
Organism: Heterodera glycines Gene Locus: chr6:5112780-5114470 Feature type: polypeptideProtein Sequence
Length: 232
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.952 | 1.203 | 1.646 | 0.149 | 2.299 | 1.216 | 0.411 | 0.216 | 0.862 | 1.281 | 1.502 | 2.282 | 1.437 | 0.829 | 0.44 | 1.108 | 0.707 | 0.327 | 0.332 | 0.38 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11342
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal|peroxisomal_targeting_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.497
|
0.379
|
0.079
|
0.708
|
0.253
|
0.263
|
0.304
|
0.607
|
0.079
|
0.038
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010460
|
1.000
|
1.000
|
Hsc_gene_7374.t1
|
Hsc_gene_7374.t1
|
— |
Q3SZD1.1 Peroxisomal biogenesis factor 19 [Bos taurus]
|
KAI1725369.1 pex19 protein family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005777
|
GO:0008150_0.754|GO:0005575_0.701|GO:0110165_0.697|GO:0005622_0.673|GO:0005737_0.611
|
IPR006708+6-224_25-221+|IPR038322+109-226+
|
— |
PF04614+25-221+Pex19_protein_family
|
— |
PTHR12774+6-224+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-93;232-232
|
1.000
|
94-231
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.945
|
26297.210
|
4.112
|
-24.500
|
35.345
|
7.328
|
57.328
|
42.672
|
12.500
|
22.845
|
44.828
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkturquoise
|
562.546
|
289.620
|
465.178
|
652.524
|
883.002
|
784.675
|
775.885
|
525.187
|
729.048
|
273.325
|
468.635
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.453
|
1.034
|
0.598
|
0.404
|
-0.155
|
— |
-0.682
|
0.705
|
— | — | — | — | — |
No JSON data available for plots.