Hg_chrom6_TN10mRNA_12027
Organism: Heterodera glycines Gene Locus: chr6:5123256-5126265 Feature type: polypeptideProtein Sequence
Length: 719
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.631 | 1.423 | 1.012 | 1.055 | 1.113 | 1.569 | 0.695 | 1.043 | 1.329 | 1.372 | 0.822 | 0.818 | 1.159 | 0.776 | 1.476 | 0.755 | 1.14 | 0.695 | 0.856 | 0.818 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11345
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKWK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.649
|
0.132
|
0.006
|
0.606
|
0.098
|
0.092
|
0.084
|
0.014
|
0.103
|
0.032
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004379
|
1.000
|
2.000
|
Hsc_gene_7368.t1;Hsc_gene_7371.t1
|
Hsc_gene_7371.t1
|
— |
G5ECC7.2 Ubiquitin carboxyl-terminal hydrolase usp-48 [Caenorhabditis elegans]
|
KAI1723360.1 ubiquitin carboxyl-terminal hydrolase domain-containing protein [Ditylenchus destructor]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004843|GO:0016579
|
GO:0008150_0.748|GO:0003674_0.723|GO:0005575_0.700|GO:0110165_0.689|GO:0003824_0.579|GO:0005622_0.553|GO:0016787_0.546|GO:0016020_0.541|GO:0140096_0.538|GO:0008233_0.518|GO:0009987_0.512|GO:0019783_0.502
|
IPR001394+86-364+|IPR018200+87-102_320-338+|IPR028889+86-395+|IPR029071+625-691+|IPR038765+83-396+|IPR050164+64-441+
|
— |
PF00443+86-364+Ubiquitin_carboxyl-terminal_hydrolase
|
— |
PTHR24006+64-441+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-11;683-719
|
1.000
|
12-682
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.691
|
82151.310
|
7.720
|
10.500
|
26.982
|
10.153
|
51.460
|
48.540
|
14.743
|
12.239
|
46.871
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
saddlebrown
|
2356.555
|
1742.544
|
1035.219
|
1405.436
|
1960.845
|
4815.077
|
3020.421
|
6155.505
|
1894.446
|
1338.451
|
1576.735
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.982
|
-0.447
|
0.550
|
0.449
|
1.311
|
-0.661
|
— |
-0.880
|
— | — | — | — | — |
No JSON data available for plots.