Hg_chrom6_TN10mRNA_12030
Organism: Heterodera glycines Gene Locus: chr6:5129800-5131205 Feature type: polypeptideProtein Sequence
Length: 304
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.071 | 0.994 | 0.778 | 0.794 | 0.11 | 0.59 | 0.587 | 0.822 | 1.17 | 1.556 | 0.498 | 1.161 | 3.198 | 0.569 | 1.276 | 1.269 | 0.863 | 0.897 | 2.024 | 1.451 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11348
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.748
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum|golgi_apparatus
|
— | — |
65-85
|
1.000
|
54-78
|
0.999
|
— | — |
0.000
|
— | — |
0.140
|
0.255
|
0.005
|
0.105
|
0.625
|
0.441
|
0.684
|
0.018
|
0.426
|
0.033
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010465
|
1.000
|
1.000
|
Hsc_gene_7365.t1
|
Hsc_gene_7365.t1
|
— |
Q10045.2 Protein unc-50 [Caenorhabditis elegans]
|
KAI1731861.1 UNC-50 family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.916|GO:0110165_0.916|GO:0071944_0.894|GO:0016020_0.893|GO:0005886_0.890|GO:0005622_0.770|GO:0005737_0.770|GO:0005773_0.770|GO:0043226_0.770|GO:0043227_0.770|GO:0043229_0.770|GO:0043231_0.770|GO:0012505_0.730|GO:0008150_0.717|GO:0051179_0.630
|
IPR007881+59-294_74-294+
|
— |
PF05216+74-294+UNC-50_family
|
— |
PTHR12841+59-294+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-304
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.743
|
34929.670
|
9.836
|
16.500
|
16.118
|
20.724
|
36.842
|
63.158
|
11.184
|
4.934
|
48.026
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey60
|
1679.343
|
825.142
|
995.259
|
1001.417
|
1230.383
|
1331.388
|
985.413
|
1186.700
|
2138.387
|
2909.949
|
2579.279
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.142
|
— |
0.265
|
— |
-0.426
|
-0.270
|
— | — | — | — | — | — |
No JSON data available for plots.