Hg_chrom6_TN10mRNA_12031
Organism: Heterodera glycines Gene Locus: chr6:5131320-5132396 Feature type: polypeptideProtein Sequence
Length: 237
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.638 | 0.687 | 1.074 | 0.291 | 2.25 | 0.974 | 0.352 | 1.477 | 1.031 | 1.197 | 1.982 | 0.993 | 1.289 | 0.568 | 2.411 | 0.663 | 0.692 | 0.384 | 0.649 | 0.496 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11349
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-Not_Clustered
|
0.531
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRKLKETEKERRRPY,RRAAIYKWQYERKK.,RRTRDHQEKSADIKKLKRS,KRDLALSKKSELKPKLIKK,KKGDARRAAIYKWQYERKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.834
|
0.219
|
0.009
|
0.206
|
0.051
|
0.014
|
0.029
|
0.003
|
0.025
|
0.049
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010466
|
1.000
|
1.000
|
Hsc_gene_7364.t1
|
Hsc_gene_7364.t1
|
— |
Q09462.1 Probable U3 small nucleolar RNA-associated protein 11 [Caenorhabditis elegans]
|
KAF7632418.1 U3 small nucleolar RNA-associated protein 11 [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006364|GO:0032040
|
GO:0005575_0.940|GO:0110165_0.938|GO:0005622_0.937|GO:0043226_0.910|GO:0043229_0.902|GO:0016020_0.874|GO:0043227_0.840|GO:0043231_0.826|GO:0043228_0.814|GO:0043232_0.814|GO:0005634_0.766|GO:0008150_0.712|GO:0031974_0.697|GO:0031981_0.697|GO:0043233_0.697|GO:0070013_0.697|GO:0009987_0.687|GO:0005730_0.659|GO:0032991_0.624|GO:0071840_0.581|GO:0022613_0.515|GO:0044085_0.515|GO:0042254_0.508|GO:1990904_0.507
|
IPR007144+5-237_9-237+
|
— |
PF03998+9-237+Utp11_protein
|
— |
PTHR12838+9-237+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-76
|
1.000
|
77-237
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.588
|
28582.620
|
10.297
|
16.500
|
47.257
|
10.127
|
62.869
|
37.131
|
27.848
|
19.409
|
32.489
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
6691.439
|
1516.929
|
3861.118
|
1593.513
|
1556.212
|
1341.812
|
1614.633
|
1367.790
|
28589.367
|
3013.519
|
13974.597
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.119
|
— |
-1.169
|
— |
-0.199
|
0.279
|
— |
0.384
|
3.146
|
-4.020
|
— | — | — |
No JSON data available for plots.