Hg_chrom6_TN10mRNA_12034
Organism: Heterodera glycines Gene Locus: chr6:5142928-5148646 Feature type: polypeptideProtein Sequence
Length: 1,163
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.94 | 1.0 | 0.782 | 0.712 | 1.763 | 1.301 | 1.126 | 0.946 | 0.688 | 0.964 | 0.847 | 1.214 | 1.146 | 0.876 | 1.948 | 0.921 | 0.93 | 0.664 | 0.529 | 0.278 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11351
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RKKR,RRRR,RREESAGRRRARRGDR,KKTSGDIDQIGTELFGRKK,EKRPRPKERRESRDGIPPVIGGRREESAGRRRARRGD
|
— | — | — | — | — | — |
0.000
|
— | — |
0.326
|
0.102
|
0.008
|
0.695
|
0.108
|
0.185
|
0.123
|
0.105
|
0.190
|
0.049
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004381
|
1.000
|
2.000
|
Hsc_gene_7361.t1;Hsc_gene_7361.t2
|
Hsc_gene_7361.t1;Hsc_gene_7361.t2
|
— |
Q03601.2 RING finger protein nhl-1 [Caenorhabditis elegans]
|
KAF7632422.1 RING-type domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.915|GO:0005575_0.769|GO:0110165_0.765|GO:0003674_0.693|GO:0005622_0.675|GO:0009987_0.618|GO:0065007_0.616|GO:0050789_0.592|GO:0008152_0.564|GO:0050794_0.521|GO:0044238_0.509
|
IPR001258+878-923_928-972_976-1020_1024-1068_1074-1115_1087-1110_1119-1163+|IPR001841+41-84_41-85+|IPR011042+868-978_979-1075_1076-1163+|IPR013083+30-119+|IPR017907+56-65+|IPR027370+41-82+|IPR050952+57-933+
|
SM00184+41-84+
|
PF01436+1087-1110+NHL_repeat|PF13445+41-82+RING-type_zinc-finger|PF17170+952-1024+6-bladed_beta-propeller
|
— |
PTHR24104+57-933+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-29;355-882
|
2.000
|
30-354;883-1163
|
6xg7_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.786
|
129406.690
|
7.734
|
14.000
|
31.900
|
7.653
|
53.396
|
46.604
|
17.025
|
14.875
|
49.269
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
3172.296
|
2992.414
|
5893.027
|
2901.627
|
1991.834
|
3061.548
|
1372.321
|
13444.416
|
883.517
|
1344.713
|
1147.057
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.749
|
-0.182
|
-0.913
|
-0.575
|
0.634
|
-1.147
|
2.030
|
-3.149
|
— | — | — | — | — |
No JSON data available for plots.