SCN Proteipedia

Hg_chrom6_TN10mRNA_12035

Organism: Heterodera glycines Gene Locus: chr6:5149964-5151196 Feature type: polypeptide

Protein Sequence

Length: 342

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.204	0.544	0.904	0.403	4.873	2.024	0.557	0.439	0.715	0.435	2.835	0.688	0.487	0.281	1.551	0.543	0.575	0.222	0.225	0.258	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11352	—	—	1.111	1.000	1.000	1.000	1.000	2.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	KKEKEEKKEEDKKEKE,KRKTEQKQKQQQKRTKRE,KRTKREEKKEEEDKKEKE,KREEKKEEEDKKEKEEKK,RKTEQKQKQQQKRTKREEK,KGIENSTKERERGEREKEREGRKGKGDEREKEREGEKEREGGKGEKGK	—	—	—	—	—	—	0.000	—	—	0.674	0.096	0.017	0.560	0.105	0.040	0.069	0.001	0.071	0.121

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004382	2.000	1.000	Hsc_gene_7360.t1	Hsc_gene_7360.t1	—	G5EE18.1 Homeobox protein ceh-28 [Caenorhabditis elegans]	KHN70626.1 Homeobox protein Nkx-2.6 [Toxocara canis]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000981\|GO:0003677\|GO:0006355	GO:0008150_0.901\|GO:0009987_0.821\|GO:0065007_0.786\|GO:0050789_0.784\|GO:0005575_0.769\|GO:0005622_0.768\|GO:0110165_0.768\|GO:0050794_0.767\|GO:0043226_0.764\|GO:0043229_0.751\|GO:0032502_0.723\|GO:0048856_0.720\|GO:0032501_0.718\|GO:0003674_0.684\|GO:0005488_0.684\|GO:0007275_0.676\|GO:0043228_0.669\|GO:0043232_0.669\|GO:0016020_0.663\|GO:0008152_0.642\|GO:0009058_0.642\|GO:0009059_0.642\|GO:0010467_0.642\|GO:0043170_0.642\|GO:0044237_0.642\|GO:0044249_0.642\|GO:0043227_0.633\|GO:0006139_0.626\|GO:0044238_0.626\|GO:0090304_0.626\|GO:0019222_0.617\|GO:0060255_0.615\|GO:0034654_0.614\|GO:0141187_0.614\|GO:0016070_0.607\|GO:0032774_0.607\|GO:0031323_0.605\|GO:0048731_0.605\|GO:0080090_0.598\|GO:0005634_0.594\|GO:0043231_0.594\|GO:0009889_0.587\|GO:0031326_0.587\|GO:0048869_0.584\|GO:0030154_0.582\|GO:0010556_0.578\|GO:0010468_0.571\|GO:0003676_0.559\|GO:0097159_0.559\|GO:0048518_0.552\|GO:0019219_0.549\|GO:0006351_0.546\|GO:0048522_0.544\|GO:0051252_0.540\|GO:0006355_0.538\|GO:2001141_0.538\|GO:0048513_0.518\|GO:0006366_0.508	IPR000047+264-273_273-289+\|IPR001356+233-293_235-297_236-292+\|IPR009057+225-294+\|IPR017970+268-291+\|IPR020479+257-268_272-282_282-291+\|IPR050877+210-304+	SM00389+235-297+	PF00046+236-292+Homeodomain	—	PTHR24339+210-304+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-266	1.000	267-342	5flv_M	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.970	41585.330	4.663	-25.500	61.404	3.801	78.947	21.053	27.193	34.211	25.146

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	grey	212.655	49.414	181.035	64.085	20.968	15.756	37.513	76.285	128.561	667.051	436.269

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.641	—	-1.387	-1.640	—	1.267	2.171	-0.878	-2.490	—	-4.906	—	—

No JSON data available for plots.

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