Hg_chrom6_TN10mRNA_12041
Organism: Heterodera glycines Gene Locus: chr6:5162530-5164897 Feature type: polypeptideProtein Sequence
Length: 402
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.839 | 1.273 | 0.588 | 0.944 | 0.456 | 1.276 | 0.503 | 1.493 | 1.99 | 1.277 | 0.377 | 1.463 | 2.142 | 0.813 | 0.711 | 1.35 | 1.06 | 0.678 | 1.339 | 1.61 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11356
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.046
|
0.114
|
0.007
|
0.100
|
0.335
|
0.522
|
0.609
|
0.014
|
0.776
|
0.027
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002322
|
2.000
|
2.000
|
Hsc_gene_7356.t1;Hsc_gene_7356.t2
|
Hsc_gene_7356.t1;Hsc_gene_7356.t2
|
— |
A2VDL9.1 Transmembrane protein 184B [Bos taurus]
|
KAH7732057.1 Organic solute transporter Ost-alpha [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.921|GO:0110165_0.915|GO:0016020_0.877|GO:0071944_0.797|GO:0005886_0.790|GO:0005622_0.630|GO:0008150_0.621|GO:0043226_0.607|GO:0005737_0.603|GO:0009987_0.583|GO:0043227_0.581|GO:0043229_0.579|GO:0043231_0.570
|
IPR005178+4-371_20-295_22-295+
|
SM01417+20-295+
|
PF03619+22-295+Organic_solute_transporter_Ostalpha
|
— |
PTHR23423+4-371+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
331-402
|
1.000
|
1-330
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.732
|
45801.720
|
7.410
|
6.000
|
14.925
|
17.910
|
41.294
|
58.706
|
8.955
|
5.970
|
47.512
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
2679.490
|
2628.971
|
3031.049
|
2021.924
|
2427.119
|
4396.705
|
2146.627
|
3406.525
|
2457.770
|
2357.345
|
2400.385
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.516
|
-0.476
|
0.232
|
0.873
|
-1.027
|
-0.471
|
-0.527
|
— | — | — | — | — |
No JSON data available for plots.