SCN Proteipedia

Hg_chrom6_TN10mRNA_12042

Organism: Heterodera glycines Gene Locus: chr6:5165977-5172392 Feature type: polypeptide

Protein Sequence

Length: 1,337

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.713	1.339	0.843	2.089	0.76	1.189	0.926	1.384	1.097	1.011	0.589	1.232	1.558	0.978	1.023	1.154	0.92	0.85	1.151	0.814	0.0

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Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11357	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	8-Eggs_J4_Males	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	—	19-63	0.946	46-72	0.997	—	—	0.000	—	—	0.152	0.029	0.018	0.252	0.266	0.473	0.364	0.021	0.769	0.117

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010470	1.000	1.000	Hsc_gene_7355.t1	Hsc_gene_7355.t1	—	Q19981.3 Putative protein tag-53 [Caenorhabditis elegans]	KAI1731926.1 kelch motif domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0008150_0.840\|GO:0009987_0.672\|GO:0005575_0.665\|GO:0110165_0.662\|GO:0065007_0.580\|GO:0003674_0.563\|GO:0050789_0.556\|GO:0071944_0.541\|GO:0016020_0.504	IPR000742+67-98_70-98_86-97_215-243_246-281_911-943_968-1018_1019-1066+\|IPR000859+100-214_104-214_110-211_118-211+\|IPR002049+969-1017_969-1018_969-1019_988-1022_1020-1065_1020-1066_1020-1067+\|IPR002165+854-904+\|IPR006652+356-401_368-422_478-530+\|IPR015915+285-453_316-611_454-636+\|IPR016201+684-728_853-906_911-972+\|IPR035914+99-213_121-211+\|IPR051568+153-763+	SM00042+104-214+\|SM00180+969-1017_1020-1065+\|SM00181+70-98_215-243_246-281_911-943_968-1018_1019-1066+\|SM00423+684-728_853-906_911-972+\|SM00612+368-422_478-530+	PF00053+969-1017_1020-1065+Laminin_EGF_domain\|PF00431+118-211+CUB_domain\|PF01344+356-401+Kelch_motif\|PF01437+854-904+Plexin_repeat	—	PTHR46376+153-763+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-1337	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.809	148363.670	7.104	14.500	20.868	12.640	44.951	55.049	11.668	9.200	54.749

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	3454.521	6594.572	3375.176	2474.665	3029.667	6874.403	3682.359	4549.542	2375.350	1864.373	2083.364

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.196	-1.551	-0.339	0.260	1.198	-0.892	-0.701	-0.164	—	—	—	—	—

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