Hg_chrom6_TN10mRNA_12047
Organism: Heterodera glycines Gene Locus: chr6:5181516-5186643 Feature type: polypeptideProtein Sequence
Length: 907
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.808 | 0.923 | 0.902 | 0.57 | 1.323 | 0.735 | 0.709 | 0.937 | 0.956 | 1.684 | 0.618 | 1.167 | 1.348 | 1.124 | 0.945 | 1.449 | 0.904 | 0.852 | 1.103 | 0.876 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11361
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.599
|
0.247
|
0.023
|
0.542
|
0.220
|
0.375
|
0.267
|
0.052
|
0.150
|
0.152
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010474
|
1.000
|
1.000
|
Hsc_gene_7352.t1
|
Hsc_gene_7352.t1
|
— |
O60502.2 Protein O-GlcNAcase [Homo sapiens]
|
KAH7732027.1 hyaluronidase [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.952|GO:0003674_0.847|GO:0008152_0.777|GO:0044238_0.764|GO:0043170_0.749|GO:0019538_0.722|GO:0005575_0.708|GO:0003824_0.704|GO:0110165_0.700|GO:0036211_0.696|GO:0043412_0.696|GO:1901135_0.685|GO:0016787_0.680|GO:0009100_0.676|GO:0004553_0.654|GO:0016798_0.654|GO:0015929_0.650|GO:0016020_0.636|GO:0005622_0.628|GO:0005737_0.563
|
IPR011496+7-282_9-291+|IPR017853+8-293+|IPR051822+3-906+
|
— |
PF07555+9-291+beta-N-acetylglucosaminidase
|
G3DSA:3.20.20.80:FF:000009+6-287+O-GlcNAcase_BT_4395
|
PTHR13170+3-906+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
345-495
|
2.000
|
1-344;496-907
|
6pm9_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.537
|
100805.400
|
4.685
|
-29.500
|
23.484
|
11.136
|
45.976
|
54.024
|
10.584
|
12.900
|
50.606
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1252.837
|
2046.911
|
1088.627
|
1088.922
|
1245.633
|
1483.077
|
3325.091
|
1276.339
|
456.571
|
805.758
|
656.106
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.140
|
-1.048
|
0.109
|
0.162
|
0.266
|
1.175
|
-0.324
|
1.525
|
— | — | — | — | — |
No JSON data available for plots.