Hg_chrom6_TN10mRNA_12049
Organism: Heterodera glycines Gene Locus: chr6:5191094-5191714 Feature type: polypeptideProtein Sequence
Length: 148
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.728 | 1.257 | 1.106 | 0.233 | 0.338 | 1.04 | 0.804 | 1.351 | 0.751 | 1.096 | 1.024 | 2.385 | 1.126 | 0.78 | 0.827 | 0.965 | 0.997 | 1.331 | 0.52 | 0.199 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11363
|
— | — |
1.889
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.504
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — |
61-81
|
0.979
|
— | — | — | — |
0.000
|
— | — |
0.762
|
0.310
|
0.012
|
0.414
|
0.108
|
0.178
|
0.071
|
0.073
|
0.140
|
0.111
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001363
|
3.000
|
2.000
|
Hsc_gene_7351.t1;Hsc_gene_7351.t2
|
Hsc_gene_7351.t1;Hsc_gene_7351.t2
|
— |
Q8K4K6.1 Pantothenate kinase 1 [Mus musculus]
|
KAH7732026.1 pantothenate kinase family protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004594|GO:0005524|GO:0015937
|
GO:0003674_0.813|GO:0005575_0.769|GO:0008150_0.756|GO:0110165_0.754|GO:0009987_0.693|GO:0005622_0.687|GO:0003824_0.656|GO:0005737_0.624|GO:0008152_0.624|GO:0044237_0.593|GO:0016740_0.575|GO:0016772_0.563|GO:0004594_0.558|GO:0016301_0.558|GO:0016773_0.558|GO:0044238_0.543|GO:0044281_0.535
|
IPR004567+2-105_2-113+|IPR043129+2-106+
|
— |
PF03630+2-105+Fumble
|
— |
PTHR12280+2-113+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
116-148
|
1.000
|
1-115
|
3smp_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.856
|
15723.060
|
10.058
|
6.000
|
21.622
|
8.108
|
43.919
|
56.081
|
13.514
|
8.108
|
59.459
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
white
|
36.009
|
5.372
|
7.713
|
22.834
|
68.849
|
43.066
|
193.254
|
66.594
|
0.691
|
4.141
|
2.662
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.951
|
1.677
|
1.558
|
-0.663
|
2.177
|
— |
1.681
|
— |
4.886
|
— | — | — |
No JSON data available for plots.