Hg_chrom6_TN10mRNA_12050
Organism: Heterodera glycines Gene Locus: chr6:5191799-5192437 Feature type: polypeptideProtein Sequence
Length: 106
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.207 | 0.439 | 0.858 | 0.325 | 1.258 | 0.242 | 0.786 | 0.943 | 2.096 | 0.51 | 0.715 | 1.665 | 0.262 | 1.27 | 2.31 | 0.809 | 0.773 | 1.429 | 0.726 | 1.387 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11364
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.411
|
0.338
|
0.321
|
0.370
|
0.331
|
0.313
|
0.215
|
0.336
|
0.216
|
0.275
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004383
|
2.000
|
1.000
|
Hsc_gene_24253.t1
|
— | — |
Q976A0.2 Nucleoside diphosphate kinase [Sulfurisphaera tokodaii str. 7]
|
HOF79192.1 nucleoside-diphosphate kinase [Candidatus Dojkabacteria bacterium];HOR06011.1 nucleoside-diphosphate kinase [Candidatus Dojkabacteria bacterium];HOT60751.1 nucleoside-diphosphate kinase [Candidatus Dojkabacteria bacterium];HQI92584.1 nucleoside-diphosphate kinase [Candidatus Dojkabacteria bacterium]
|
MCX7928900
|
0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004550|GO:0006183|GO:0006228|GO:0006241
|
GO:0005575_0.830|GO:0110165_0.815|GO:0008150_0.709|GO:0005622_0.677|GO:0003674_0.675|GO:0016020_0.596|GO:0005737_0.570|GO:0043226_0.563|GO:0009987_0.562|GO:0043229_0.530|GO:0043227_0.507|GO:0043231_0.504
|
IPR001564+30-47_78-97+|IPR034907+1-104_21-102+|IPR036850+1-105_10-103+
|
SM00562+1-104+
|
PF00334+21-102+Nucleoside_diphosphate_kinase
|
— |
PTHR11349+21-103+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-106
|
3vgt_E
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.780
|
11882.710
|
9.774
|
5.000
|
30.189
|
8.491
|
43.396
|
56.604
|
17.925
|
12.264
|
50.943
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.224
|
0.149
|
0.000
|
0.311
|
0.233
|
0.379
|
0.708
|
0.839
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.