Hg_chrom6_TN10mRNA_12051
Organism: Heterodera glycines Gene Locus: chr6:5194670-5197042 Feature type: polypeptideProtein Sequence
Length: 445
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.993 | 1.045 | 1.267 | 0.775 | 0.936 | 0.922 | 1.043 | 1.011 | 1.099 | 0.972 | 0.851 | 1.322 | 1.498 | 0.605 | 1.101 | 0.963 | 0.884 | 1.124 | 0.864 | 0.925 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11365
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.963
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.473
|
0.337
|
0.021
|
0.700
|
0.099
|
0.253
|
0.215
|
0.084
|
0.122
|
0.060
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001363
|
3.000
|
2.000
|
Hsc_gene_7351.t1;Hsc_gene_7351.t2
|
Hsc_gene_7351.t1;Hsc_gene_7351.t2
|
— |
Q8K4K6.1 Pantothenate kinase 1 [Mus musculus]
|
KAI1725428.1 fumble domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004594|GO:0005524|GO:0015937
|
GO:0003674_0.854|GO:0005575_0.784|GO:0008150_0.781|GO:0110165_0.771|GO:0003824_0.727|GO:0009987_0.718|GO:0005622_0.687|GO:0005737_0.640|GO:0008152_0.636|GO:0016740_0.613|GO:0044237_0.603|GO:0016772_0.584|GO:0016301_0.580|GO:0016773_0.578|GO:0004594_0.573|GO:0044238_0.567|GO:0044281_0.552
|
IPR004567+32-409_34-402+|IPR043129+32-177_150-403+
|
— |
PF03630+34-402+Fumble
|
G3DSA:3.30.420.40:FF:000025+206-385+pantothenate_kinase_2,_mitochondrial
|
PTHR12280+32-409+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
413-445
|
1.000
|
1-412
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.624
|
49130.530
|
6.063
|
-2.500
|
25.618
|
11.685
|
45.843
|
54.157
|
13.034
|
12.584
|
53.708
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
brown
|
967.678
|
386.229
|
385.775
|
1133.945
|
3580.895
|
2416.829
|
2038.180
|
600.587
|
145.008
|
171.421
|
160.101
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.233
|
1.417
|
1.666
|
1.627
|
-0.554
|
— |
-2.115
|
1.907
|
— | — |
4.805
|
— | — |
No JSON data available for plots.