Hg_chrom6_TN10mRNA_12056
Organism: Heterodera glycines Gene Locus: chr6:5204254-5205722 Feature type: polypeptideProtein Sequence
Length: 186
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.813 | 0.75 | 1.369 | 0.371 | 1.434 | 0.965 | 0.832 | 1.344 | 0.717 | 1.526 | 1.059 | 1.581 | 1.045 | 1.137 | 1.646 | 0.691 | 0.705 | 0.489 | 1.241 | 0.949 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11368
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.423
|
0.294
|
0.009
|
0.622
|
0.112
|
0.254
|
0.210
|
0.028
|
0.149
|
0.277
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004384
|
2.000
|
1.000
|
Hsc_gene_7348.t1
|
Hsc_gene_7348.t1
|
— |
Q4G0X4.1 BTB/POZ domain-containing protein KCTD21 [Homo sapiens]
|
KAI1731918.1 BTB/POZ domain-containing protein [Ditylenchus destructor]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0051260
|
GO:0008150_0.738|GO:0005575_0.692|GO:0110165_0.692|GO:0009987_0.690|GO:0003674_0.609|GO:0016020_0.589
|
IPR003131+29-91+|IPR011333+24-134_25-140+
|
— |
PF02214+29-91+BTB/POZ_domain
|
— |
PTHR14499+24-160+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
159-186
|
1.000
|
1-158
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.578
|
21378.220
|
6.646
|
0.500
|
33.871
|
11.290
|
50.000
|
50.000
|
17.742
|
16.129
|
44.086
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightgreen
|
188.996
|
276.265
|
468.448
|
280.352
|
235.709
|
117.532
|
20.178
|
110.445
|
62.697
|
213.985
|
149.147
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.532
|
— |
-0.632
|
-0.283
|
-0.989
|
-2.534
|
— |
-2.313
|
— | — | — | — | — |
No JSON data available for plots.