Hg_chrom6_TN10mRNA_12057
Organism: Heterodera glycines Gene Locus: chr6:5204254-5205722 Feature type: polypeptideProtein Sequence
Length: 183
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.762 | 0.762 | 1.391 | 0.377 | 1.457 | 0.981 | 0.846 | 1.366 | 0.729 | 1.477 | 1.076 | 1.607 | 1.063 | 1.051 | 1.673 | 0.703 | 0.717 | 0.497 | 1.261 | 0.964 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11368
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.423
|
0.309
|
0.010
|
0.651
|
0.109
|
0.228
|
0.234
|
0.028
|
0.149
|
0.257
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004384
|
2.000
|
1.000
|
Hsc_gene_7348.t1
|
Hsc_gene_7348.t1
|
— |
Q4G0X4.1 BTB/POZ domain-containing protein KCTD21 [Homo sapiens]
|
KAI1731918.1 BTB/POZ domain-containing protein [Ditylenchus destructor]
|
No
|
-0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0051260
|
GO:0008150_0.687|GO:0005575_0.675|GO:0110165_0.672|GO:0009987_0.641|GO:0003674_0.582|GO:0016020_0.556|GO:0065007_0.502
|
IPR003131+29-91+|IPR011333+24-131_25-137+
|
— |
PF02214+29-91+BTB/POZ_domain
|
— |
PTHR14499+24-156+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
156-183
|
1.000
|
1-155
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.569
|
21096.870
|
6.646
|
0.500
|
34.426
|
11.475
|
50.820
|
49.180
|
18.033
|
16.393
|
43.716
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightgreen
|
188.996
|
276.265
|
468.448
|
280.352
|
235.709
|
117.532
|
20.178
|
110.445
|
62.697
|
213.985
|
149.147
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.532
|
— |
-0.632
|
-0.283
|
-0.989
|
-2.534
|
— |
-2.313
|
— | — | — | — | — |
No JSON data available for plots.