SCN Proteipedia

Hg_chrom6_TN10mRNA_12058

Organism: Heterodera glycines Gene Locus: chr6:5205929-5208955 Feature type: polypeptide

Protein Sequence

Length: 468

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.168	1.044	1.166	0.737	1.104	2.246	0.611	0.214	0.712	1.357	0.518	2.262	0.653	0.945	1.483	1.282	0.911	0.874	0.164	0.126	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11369	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	2-pJ2_J3_J4_Female	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	nucleus	—	RRLRRQIANCNERRRMQ	—	—	—	—	—	—	0.000	—	—	0.851	0.169	0.011	0.352	0.036	0.038	0.084	0.034	0.052	0.012

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010476	1.000	1.000	Hsc_gene_7347.t1	Hsc_gene_7347.t1	—	Q01664.2 Transcription factor AP-4 [Homo sapiens]	KAH7731725.1 Protein HLH-11 c [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	Yes	GO:0046983	GO:0008150_0.955\|GO:0065007_0.924\|GO:0009987_0.917\|GO:0050789_0.917\|GO:0050794_0.908\|GO:0005575_0.754\|GO:0110165_0.754\|GO:0005622_0.705\|GO:0016020_0.677\|GO:0048519_0.669\|GO:0048523_0.652\|GO:0043226_0.647\|GO:0043229_0.632\|GO:0008152_0.616\|GO:0019222_0.616\|GO:0031323_0.613\|GO:0044237_0.613\|GO:0043170_0.608\|GO:0060255_0.608\|GO:0044238_0.607\|GO:0080090_0.607\|GO:0048518_0.602\|GO:0009058_0.596\|GO:0009889_0.596\|GO:0050896_0.592\|GO:0048522_0.589\|GO:0009059_0.588\|GO:0010467_0.588\|GO:0044249_0.588\|GO:0010556_0.583\|GO:0031326_0.583\|GO:0006139_0.581\|GO:0043227_0.581\|GO:0010468_0.579\|GO:0016070_0.577\|GO:0019219_0.577\|GO:0051252_0.577\|GO:0090304_0.577\|GO:0034654_0.575\|GO:0141187_0.575\|GO:0032774_0.574\|GO:0006351_0.560\|GO:0043231_0.560\|GO:2001141_0.558\|GO:0006355_0.555\|GO:0003674_0.542\|GO:0005488_0.542\|GO:0005634_0.534	IPR011598+128-179_129-179_134-185+\|IPR036638+124-190_128-208+\|IPR052207+71-244+	SM00353+134-185+	PF00010+129-179+Helix-loop-helix_DNA-binding_domain	—	PTHR15741+71-244+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	66-136;315-468	2.000	1-65;137-314	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.581	51204.710	4.773	-10.000	24.145	3.419	51.923	48.077	11.111	13.034	53.419

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	grey	1161.860	527.241	771.355	2446.685	2902.936	1820.474	1162.018	527.740	729.735	726.417	727.839

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.320	2.078	1.774	0.214	-0.658	-0.638	-1.887	1.279	—	—	—	—	—

No JSON data available for plots.

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