Hg_chrom6_TN10mRNA_12060
Organism: Heterodera glycines Gene Locus: chr6:5211119-5214718 Feature type: polypeptideProtein Sequence
Length: 757
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.876 | 1.014 | 0.865 | 0.82 | 1.453 | 1.186 | 0.44 | 1.255 | 1.174 | 1.482 | 1.481 | 1.865 | 1.138 | 0.61 | 1.159 | 0.717 | 0.563 | 0.741 | 0.61 | 1.515 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11371
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.990
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KKMRRKANKVKAVEEKAKQ
|
— | — | — | — | — | — |
0.000
|
— | — |
0.465
|
0.141
|
0.007
|
0.627
|
0.239
|
0.151
|
0.309
|
0.026
|
0.113
|
0.053
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010477
|
1.000
|
1.000
|
Hsc_gene_7344.t1
|
Hsc_gene_7344.t1
|
— |
Q9DBB4.1 N-alpha-acetyltransferase 16, NatA auxiliary subunit [Mus musculus]
|
KAI1731881.1 NMDA receptor-regulated protein 1 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.908|GO:0110165_0.905|GO:0005622_0.857|GO:0003674_0.825|GO:0005737_0.793|GO:0008150_0.603|GO:0009987_0.554|GO:0005488_0.552|GO:0016020_0.548|GO:0043226_0.547
|
IPR011990+53-221_180-480+|IPR019734+54-87_88-121_91-121_231-264_386-419_420-453+|IPR021183+8-749_194-701+
|
SM00028+54-87_88-121_231-264_386-419_420-453+
|
PF12569+194-701+N-terminal_acetyltransferase_A,_auxiliary_subunit|PF13181+91-121+Tetratricopeptide_repeat
|
G3DSA:1.25.40.1040:FF:000003+11-510+N-terminal_acetyltransferase_A,_auxiliary_subunit
|
PTHR22767+17-743+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
603-649
|
2.000
|
1-602;650-757
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.621
|
88292.160
|
8.771
|
24.500
|
31.440
|
12.550
|
48.877
|
51.123
|
17.966
|
13.474
|
39.234
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
yellow
|
2238.951
|
2204.438
|
1745.605
|
2539.050
|
2931.030
|
2883.905
|
1883.727
|
2206.172
|
2329.548
|
1900.528
|
2084.394
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.566
|
— |
0.649
|
0.175
|
— |
-0.605
|
-0.494
|
— | — | — | — | — | — |
No JSON data available for plots.