Hg_chrom6_TN10mRNA_12062
Organism: Heterodera glycines Gene Locus: chr6:5217481-5221132 Feature type: polypeptideProtein Sequence
Length: 694
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.62 | 1.139 | 0.943 | 0.745 | 1.345 | 0.961 | 0.446 | 1.441 | 1.153 | 1.577 | 0.83 | 1.441 | 1.841 | 0.776 | 1.294 | 1.338 | 0.685 | 0.786 | 0.998 | 0.636 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11373
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.966
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
KKRP,KKRKAFSKEFANNLLRIKK,KRKAFSKEFANNLLRIKKD
|
3-48
|
0.976
|
23-52
|
0.998
|
— | — |
0.000
|
— | — |
0.215
|
0.217
|
0.012
|
0.623
|
0.253
|
0.552
|
0.430
|
0.061
|
0.225
|
0.031
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010479
|
1.000
|
1.000
|
Hsc_gene_7342.t1
|
Hsc_gene_7342.t1
|
— |
I2HAA0.1 Rab GTPase-activating protein tbc-8 [Caenorhabditis elegans]
|
KAI1731883.1 rab-GTPase-TBC domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.891|GO:0110165_0.890|GO:0005622_0.838|GO:0016020_0.836|GO:0043226_0.792|GO:0043229_0.771|GO:0003674_0.769|GO:0005737_0.756|GO:0043227_0.755|GO:0043231_0.734|GO:0008150_0.728|GO:0005488_0.700|GO:0005515_0.677|GO:0009987_0.649
|
IPR000195+340-650_343-623_446-646+|IPR021935+45-176+|IPR035969+320-581_560-678+
|
SM00164+340-650+
|
PF00566+446-646+Rab-GTPase-TBC_domain|PF12068+45-176+Rab-binding_domain_(RBD)
|
— |
PTHR22957+283-674+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2
|
1.000
|
3-694
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.592
|
79992.410
|
6.505
|
0.000
|
27.954
|
12.968
|
50.144
|
49.856
|
14.697
|
13.256
|
44.092
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1493.539
|
1298.026
|
866.813
|
787.959
|
762.355
|
844.582
|
1041.495
|
1092.036
|
3958.286
|
1055.543
|
2299.576
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.812
|
-0.857
|
— | — | — |
0.312
|
— | — |
1.795
|
-2.175
|
— | — | — |
No JSON data available for plots.