Hg_chrom6_TN10mRNA_12063
Organism: Heterodera glycines Gene Locus: chr6:5221897-5223946 Feature type: polypeptideProtein Sequence
Length: 478
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.778 | 0.73 | 1.331 | 0.505 | 0.976 | 1.18 | 0.523 | 1.464 | 1.116 | 1.046 | 0.983 | 1.231 | 1.046 | 0.966 | 1.921 | 1.255 | 0.926 | 1.078 | 0.644 | 0.492 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11374
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.454
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRAR,RKASKR,RRQKRKI,KKQMKSIRTLIEQQQRRKA
|
37-61
|
0.983
|
26-59
|
0.943
|
— | — |
0.000
|
— | — |
0.760
|
0.058
|
0.138
|
0.245
|
0.059
|
0.028
|
0.025
|
0.016
|
0.069
|
0.160
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002079
|
2.000
|
2.000
|
Hsc_gene_16964.t1;Hsc_gene_8573.t1
|
Hsc_gene_17324.t1;Hsc_gene_18050.t1;Hsc_gene_19441.t1;Hsc_gene_2997.t1;Hsc_gene_3087.t1;Hsc_gene_3582.t1;Hsc_gene_8659.t1
|
— | — |
KAI1723579.1 serine carboxypeptidase s28 domain-containing protein [Ditylenchus destructor]
|
No
|
-0.220
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-108;152-206;469-478
|
2.000
|
109-151;207-468
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.819
|
54310.700
|
9.778
|
20.000
|
32.008
|
9.205
|
54.184
|
45.816
|
18.828
|
13.180
|
49.582
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
blue
|
1004.865
|
70.988
|
28.402
|
99.018
|
121.064
|
81.358
|
53.555
|
89.862
|
8.766
|
4185.618
|
2395.539
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.552
|
— |
1.912
|
— |
-0.560
|
-0.593
|
— |
-0.603
|
-9.098
|
— |
-4.740
|
— | — |
No JSON data available for plots.