Hg_chrom6_TN10mRNA_12064
Organism: Heterodera glycines Gene Locus: chr6:5224855-5225897 Feature type: polypeptideProtein Sequence
Length: 124
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.563 | 1.313 | 1.32 | 0.834 | 1.21 | 1.034 | 0.48 | 1.613 | 1.075 | 1.635 | 0.611 | 1.898 | 1.792 | 0.465 | 1.317 | 1.152 | 1.19 | 0.733 | 0.0 | 0.474 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11375
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-Not_Clustered
|
0.881
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.561
|
0.345
|
0.053
|
0.482
|
0.299
|
0.137
|
0.153
|
0.125
|
0.052
|
0.088
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004385
|
2.000
|
1.000
|
Hsc_gene_7339.t1
|
Hsc_gene_7339.t1
|
— |
Q09265.1 Histone-lysine N-methyltransferase Suv4-20 [Caenorhabditis elegans]
|
KAI1725393.1 SET domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.931|GO:0065007_0.758|GO:0009987_0.756|GO:0050789_0.755|GO:0005575_0.745|GO:0110165_0.733|GO:0005622_0.677|GO:0003674_0.674|GO:0050794_0.634|GO:0071840_0.634|GO:0016043_0.633|GO:0043226_0.625|GO:0043229_0.611|GO:0003824_0.566|GO:0006325_0.564|GO:0006338_0.561|GO:0140096_0.558|GO:0016740_0.556|GO:0008152_0.546|GO:0043170_0.546|GO:0008168_0.544|GO:0008170_0.544|GO:0008276_0.544|GO:0008757_0.544|GO:0016278_0.544|GO:0016279_0.544|GO:0016741_0.544|GO:0042054_0.544|GO:0042799_0.544|GO:0140939_0.544|GO:0140993_0.544|GO:0019222_0.536|GO:0060255_0.523|GO:0016020_0.516
|
IPR039977+1-118+|IPR041938+1-97+
|
— | — | — |
PTHR12977+1-118+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
120-124
|
1.000
|
1-119
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.662
|
14187.070
|
5.172
|
-3.000
|
28.226
|
11.290
|
53.226
|
46.774
|
13.710
|
14.516
|
46.774
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
43.829
|
5.056
|
3.562
|
19.298
|
7.597
|
6.406
|
5.065
|
11.531
|
222.680
|
2.798
|
97.033
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.796
|
2.543
|
-1.384
|
— | — | — | — |
5.493
|
— | — | — | — |
No JSON data available for plots.