Hg_chrom6_TN10mRNA_12065
Organism: Heterodera glycines Gene Locus: chr6:5227886-5229599 Feature type: polypeptideProtein Sequence
Length: 499
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.885 | 1.585 | 0.729 | 0.622 | 0.868 | 0.976 | 0.811 | 1.002 | 1.247 | 1.246 | 0.607 | 1.297 | 1.503 | 0.963 | 1.472 | 0.773 | 0.69 | 1.093 | 1.696 | 1.238 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11376
|
— | — |
1.667
|
1.000
|
1.000
|
3.000
|
1.000
|
2.000
|
1.000
|
4.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_Clustered
|
0.605
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
nucleus
|
KRKH
|
— | — | — | — |
1-18
|
0.988
|
1.000
|
0.000
|
0.000
|
0.728
|
0.153
|
0.072
|
0.370
|
0.154
|
0.086
|
0.051
|
0.008
|
0.150
|
0.092
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003610
|
2.000
|
1.000
|
Hsc_gene_24971.t1
|
Hsc_gene_24971.t1
|
— | — |
QQP40417.1 Putative LOC100898192, partial [Caligus rogercresseyi]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR007588+26-95+|IPR018289+256-322+
|
— |
PF04500+26-95+FLYWCH_zinc_finger_domain|PF10551+256-322+MULE_transposase_domain
|
— |
PTHR47160+218-465+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-499
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.850
|
56854.190
|
9.044
|
15.000
|
22.445
|
13.828
|
42.685
|
57.315
|
13.226
|
9.218
|
48.898
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
red
|
92.469
|
2.905
|
34.177
|
16.128
|
7.965
|
19.094
|
27.878
|
22.309
|
2.056
|
354.087
|
203.217
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.330
|
2.336
|
-0.978
|
-1.041
|
1.268
|
— | — | — | — | — | — | — | — |