Hg_chrom6_TN10mRNA_12066
Organism: Heterodera glycines Gene Locus: chr6:5230703-5231667 Feature type: polypeptideProtein Sequence
Length: 165
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.282 | 1.268 | 0.771 | 1.045 | 1.414 | 0.622 | 0.577 | 1.212 | 1.077 | 2.211 | 0.459 | 1.426 | 1.01 | 1.282 | 1.484 | 0.866 | 0.994 | 0.918 | 1.865 | 0.535 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11377
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Not_Clustered
|
0.731
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane|lysosome_vacuole|golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.269
|
0.228
|
0.132
|
0.371
|
0.237
|
0.599
|
0.751
|
0.006
|
0.757
|
0.076
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010480
|
1.000
|
1.000
|
Hsc_gene_7340.t1
|
Hsc_gene_7340.t1;Hsc_gene_7340.t2
|
— |
Q9UKJ5.1 Cysteine-rich hydrophobic domain-containing protein 2 [Homo sapiens]
|
KAI1731884.1 golgin subfamily A member 7/ERF4 family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.914|GO:0110165_0.902|GO:0016020_0.838|GO:0005622_0.819|GO:0043226_0.785|GO:0043229_0.767|GO:0043227_0.763|GO:0005886_0.756|GO:0071944_0.756|GO:0043231_0.751|GO:0008150_0.604|GO:0009987_0.551|GO:0005737_0.508
|
IPR019383+45-133+|IPR039735+19-165+
|
— |
PF10256+45-133+Golgin_subfamily_A_member_7/ERF4_family
|
— |
PTHR13005+19-165+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1
|
1.000
|
2-165
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.557
|
19035.050
|
5.649
|
-2.000
|
25.455
|
10.303
|
45.455
|
54.545
|
12.727
|
12.727
|
44.848
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
darkturquoise
|
1756.180
|
1262.126
|
1241.970
|
1074.947
|
1161.636
|
1470.220
|
1701.618
|
2475.143
|
1644.337
|
2554.662
|
2164.523
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.252
|
-0.369
|
— | — |
0.355
|
0.221
|
0.647
|
-0.398
|
— | — | — | — | — |
No JSON data available for plots.