SCN Proteipedia

Hg_chrom6_TN10mRNA_12067

Organism: Heterodera glycines Gene Locus: chr6:5231910-5235207 Feature type: polypeptide

Protein Sequence

Length: 469

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.818	1.438	0.853	0.956	1.386	1.257	0.863	0.746	1.137	1.21	1.163	1.881	1.007	0.574	1.958	0.822	0.734	0.517	0.492	0.564	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11378	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_described	0.996

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	KTEEG,RREAEPKADNEPKQQRK,RKDINDFSVMYSTRKKRAQ,RRIKSEDIDEEEKQKYKLR,EPKQQRKMANGEKRMVKQRQRKSEKRNKKQMKRNERKGRKGGGKGKRRSEQQQRVRGRGEK	—	—	—	—	—	—	0.000	—	—	0.782	0.159	0.010	0.525	0.090	0.016	0.065	0.010	0.136	0.034

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004385	2.000	1.000	Hsc_gene_7339.t1	Hsc_gene_7339.t1	—	Q09265.1 Histone-lysine N-methyltransferase Suv4-20 [Caenorhabditis elegans]	KAI1725393.1 SET domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0042799	GO:0008150_0.897\|GO:0005575_0.790\|GO:0003674_0.783\|GO:0110165_0.782\|GO:0009987_0.766\|GO:0005622_0.734\|GO:0065007_0.716\|GO:0043226_0.708\|GO:0050789_0.700\|GO:0043229_0.686\|GO:0071840_0.643\|GO:0016043_0.620\|GO:0050794_0.586\|GO:0008152_0.576\|GO:0043170_0.576\|GO:0016020_0.574\|GO:0003824_0.561\|GO:0005488_0.556\|GO:0006325_0.555\|GO:0006338_0.552\|GO:0016740_0.543\|GO:0140096_0.543\|GO:0043228_0.528\|GO:0043232_0.528\|GO:0008168_0.523\|GO:0008757_0.523\|GO:0016741_0.523\|GO:0140993_0.523\|GO:0008170_0.518\|GO:0008276_0.518\|GO:0016278_0.518\|GO:0016279_0.518\|GO:0042054_0.518\|GO:0042799_0.518\|GO:0140939_0.518\|GO:0019222_0.509	IPR001214+122-238_127-244_139-238+\|IPR025790+2-314+\|IPR039977+17-441+\|IPR041938+18-118+\|IPR046341+114-256_121-265+	SM00317+127-244+	PF00856+139-238+SET_domain	G3DSA:2.170.270.10:FF:000006+120-265+Histone-lysine_N-methyltransferase	PTHR12977+17-441+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	335-469	1.000	1-334	7yrg_L	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.792	53456.060	9.820	23.500	31.770	7.676	53.092	46.908	18.763	13.006	44.563

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	627.347	876.165	708.743	704.834	732.864	700.840	601.866	557.885	689.272	396.492	521.969

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.537	-0.451	—	—	—	-0.209	-0.434	0.252	—	—	—	—	—

No JSON data available for plots.

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