Hg_chrom6_TN10mRNA_12068
Organism: Heterodera glycines Gene Locus: chr6:5235450-5239888 Feature type: polypeptideProtein Sequence
Length: 981
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.889 | 1.328 | 1.075 | 1.23 | 0.866 | 0.68 | 0.704 | 1.376 | 1.042 | 1.391 | 0.68 | 1.199 | 1.472 | 0.784 | 1.477 | 1.18 | 0.769 | 0.834 | 1.255 | 0.72 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11379
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.857
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
lysosome_vacuole
|
— |
FKRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.416
|
0.234
|
0.018
|
0.378
|
0.100
|
0.505
|
0.244
|
0.076
|
0.159
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010481
|
1.000
|
1.000
|
Hsc_gene_7337.t1
|
Hsc_gene_7337.t1;Hsc_gene_7338.t1
|
— |
Q5RCA2.1 GATOR2 complex protein MIOS [Pongo abelii]
|
KAI1731887.1 zinc-ribbon like family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.871|GO:0005575_0.752|GO:0110165_0.748|GO:0009987_0.662|GO:0005622_0.661|GO:0065007_0.612|GO:0050789_0.605|GO:0050896_0.582|GO:0050794_0.573|GO:0051716_0.534|GO:0016020_0.521|GO:0032502_0.516|GO:0048856_0.516|GO:0007154_0.504|GO:0048518_0.503
|
IPR015943+59-366+|IPR031488+836-956_884-955+|IPR036322+72-352+|IPR037593+72-270+|IPR049092+432-681+
|
— |
PF17034+836-956+Zinc-ribbon_like_family|PF21719+432-681+MIOS,_alpha-solenoid|PF21720+77-284+MIOS,_WD40_repeat
|
— |
PTHR16453+72-270+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-981
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.783
|
110429.920
|
7.843
|
19.500
|
25.586
|
12.130
|
46.891
|
53.109
|
14.475
|
11.111
|
51.274
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
darkorange
|
1646.693
|
1842.153
|
1590.615
|
1391.527
|
1496.074
|
1246.351
|
2296.112
|
1440.796
|
1169.213
|
2088.513
|
1694.527
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.442
|
-0.542
|
— | — |
-0.248
|
0.892
|
— |
0.815
|
— | — | — | — | — |
No JSON data available for plots.