Hg_chrom6_TN10mRNA_12069
Organism: Heterodera glycines Gene Locus: chr6:5240019-5241099 Feature type: polypeptideProtein Sequence
Length: 193
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.542 | 0.964 | 0.942 | 1.429 | 0.518 | 1.063 | 0.987 | 0.518 | 2.188 | 0.56 | 0.628 | 1.829 | 1.727 | 1.295 | 0.634 | 1.036 | 1.019 | 1.413 | 0.399 | 1.372 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11380
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.898
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.601
|
0.129
|
0.032
|
0.619
|
0.146
|
0.140
|
0.073
|
0.025
|
0.208
|
0.093
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010482
|
1.000
|
1.000
|
Hsc_gene_7336.t1
|
Hsc_gene_7336.t1
|
— |
Q9QZB9.1 Dynactin subunit 5 [Mus musculus]
|
XP_020301653.1 dynactin 5 [Loa loa];EFO17971.2 dynactin 5 [Loa loa]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.648|GO:0110165_0.641|GO:0016020_0.553|GO:0005622_0.543|GO:0005737_0.543|GO:0008150_0.513|GO:0071944_0.503
|
IPR011004+13-170+|IPR047125+1-180_13-173+
|
— |
PF21711+2-180+Dynactin_subunit_5
|
— |
PTHR46126+1-180+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-193
|
5nw4_h
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.763
|
21238.560
|
5.707
|
-1.000
|
16.580
|
12.435
|
38.342
|
61.658
|
8.290
|
8.290
|
55.959
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightgreen
|
675.663
|
685.406
|
601.075
|
556.433
|
590.288
|
498.993
|
660.012
|
673.667
|
251.253
|
1167.882
|
775.041
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.419
|
-0.438
|
— | — |
-0.227
|
0.414
|
0.328
|
— | — | — | — | — | — |
No JSON data available for plots.