Hg_chrom6_TN10mRNA_12070
Organism: Heterodera glycines Gene Locus: chr6:5241272-5243387 Feature type: polypeptideProtein Sequence
Length: 416
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.811 | 0.894 | 1.136 | 0.746 | 1.082 | 0.986 | 0.773 | 1.322 | 1.442 | 0.942 | 0.911 | 1.414 | 1.669 | 1.017 | 0.932 | 0.893 | 0.591 | 1.166 | 0.925 | 1.414 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11381
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.943
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.632
|
0.312
|
0.059
|
0.671
|
0.132
|
0.271
|
0.226
|
0.065
|
0.173
|
0.051
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010483
|
1.000
|
1.000
|
Hsc_gene_7335.t1
|
Hsc_gene_7335.t1
|
— |
Q9N4I0.1 Actin-related protein 3 [Caenorhabditis elegans]
|
KAH7728411.1 actin-related protein 3B [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.885|GO:0110165_0.878|GO:0005622_0.751|GO:0008150_0.713|GO:0043226_0.650|GO:0009987_0.641|GO:0016020_0.614|GO:0005737_0.612|GO:0043229_0.575|GO:0003674_0.542
|
IPR004000+5-407_5-411_7-402_26-35_52-63_65-87_119-132+|IPR020902+108-120+|IPR043129+5-152_160-411+
|
SM00268+5-411+
|
PF00022+5-407+Actin
|
G3DSA:3.30.420.40:FF:000029+8-165+Actin-related_protein_3|G3DSA:3.90.640.10:FF:000006+192-291+Actin-related_protein_3_(ARP3)
|
PTHR11937+7-402+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-416
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.531
|
47194.870
|
5.973
|
-3.500
|
25.962
|
14.663
|
43.510
|
56.490
|
13.221
|
12.740
|
48.558
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
midnightblue
|
1418.233
|
1083.438
|
1216.411
|
1387.738
|
1660.710
|
1701.997
|
2197.068
|
1840.808
|
446.780
|
1711.621
|
1169.546
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.220
|
0.299
|
0.227
|
— |
0.380
|
— |
0.399
|
— | — | — | — | — |
No JSON data available for plots.