Hg_chrom6_TN10mRNA_12071
Organism: Heterodera glycines Gene Locus: chr6:5244176-5245142 Feature type: polypeptideProtein Sequence
Length: 221
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.684 | 1.052 | 1.152 | 0.468 | 1.207 | 1.392 | 0.593 | 1.81 | 1.207 | 1.651 | 1.234 | 2.396 | 0.754 | 0.87 | 1.108 | 1.034 | 0.742 | 0.754 | 0.348 | 0.266 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11382
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.889
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — |
51-72
|
0.987
|
— | — |
0.000
|
— | — |
0.805
|
0.115
|
0.018
|
0.344
|
0.070
|
0.120
|
0.150
|
0.020
|
0.059
|
0.070
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010484
|
1.000
|
1.000
|
Hsc_gene_7334.t1
|
Hsc_gene_7334.t1
|
— | — |
KAI1721773.1 mediator of RNA polymerase II transcription complex subunit 8 domain-containing protein [Ditylenchus destructor]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003712|GO:0006357|GO:0016592
|
GO:0005575_0.771|GO:0110165_0.768|GO:0005622_0.738|GO:0043226_0.689|GO:0016020_0.676|GO:0043229_0.676|GO:0043227_0.621|GO:0043231_0.600|GO:0005634_0.531
|
IPR019364+10-202_13-215+
|
— |
PF10232+10-202+Mediator_of_RNA_polymerase_II_transcription_complex_subunit_8
|
— |
PTHR13074+13-215+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
199-221
|
1.000
|
1-198
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.664
|
24968.740
|
7.482
|
4.000
|
30.769
|
7.692
|
52.489
|
47.511
|
17.195
|
13.575
|
44.344
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
saddlebrown
|
692.030
|
616.979
|
583.385
|
507.690
|
601.055
|
501.461
|
703.553
|
613.150
|
491.379
|
1111.371
|
845.660
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.310
|
-0.418
|
— |
0.212
|
-0.246
|
0.499
|
— |
0.342
|
— | — | — | — | — |
No JSON data available for plots.