Hg_chrom6_TN10mRNA_12074
Organism: Heterodera glycines Gene Locus: chr6:5248029-5254420 Feature type: polypeptideProtein Sequence
Length: 1,221
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.99 | 0.59 | 0.849 | 0.763 | 0.956 | 1.176 | 0.712 | 1.31 | 0.619 | 1.605 | 0.546 | 1.397 | 0.956 | 1.103 | 1.855 | 1.544 | 0.577 | 1.104 | 0.945 | 0.41 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11385
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.973
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
REKKRRV
|
28-56
|
0.997
|
35-58
|
0.959
|
— | — |
0.000
|
— | — |
0.222
|
0.223
|
0.138
|
0.616
|
0.194
|
0.441
|
0.372
|
0.128
|
0.408
|
0.104
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004386
|
1.000
|
2.000
|
Hsc_gene_7331.t1;Hsc_gene_7331.t2
|
Hsc_gene_7331.t1;Hsc_gene_7331.t2
|
— | — |
KAI1725401.1 ankyrin repeat and fibronectin type-III domain-containing protein 1 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0007165
|
GO:0008150_0.961|GO:0032501_0.829|GO:0050896_0.813|GO:0006950_0.711|GO:0003008_0.696|GO:0006952_0.682|GO:0050877_0.680|GO:0007610_0.679|GO:0048511_0.679|GO:0007600_0.676|GO:0007623_0.675|GO:0007626_0.675|GO:0001662_0.670|GO:0002209_0.670|GO:0007622_0.670|GO:0033555_0.670|GO:0042596_0.670|GO:0045475_0.670|GO:0048512_0.670|GO:0050879_0.670|GO:0050881_0.670|GO:0050885_0.670|GO:0050905_0.670|GO:0050957_0.670
|
IPR000159+1107-1208+|IPR003961+392-483_394-489+|IPR013783+381-487+|IPR036116+387-482+|IPR039269+161-1055+
|
— | — | — |
PTHR21437+161-1055+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-150
|
1.000
|
151-1221
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.882
|
135306.940
|
9.301
|
44.000
|
25.717
|
8.681
|
47.174
|
52.826
|
15.315
|
10.401
|
51.269
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
purple
|
473.557
|
875.767
|
597.541
|
302.855
|
232.432
|
374.972
|
363.148
|
706.335
|
70.729
|
723.871
|
443.953
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.781
|
-1.669
|
-0.871
|
-0.414
|
0.705
|
— |
0.805
|
-0.815
|
-3.482
|
— | — | — | — |
No JSON data available for plots.