Hg_chrom6_TN10mRNA_12075
Organism: Heterodera glycines Gene Locus: chr6:5255084-5256101 Feature type: polypeptideProtein Sequence
Length: 181
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.514 | 0.899 | 1.205 | 0.953 | 1.657 | 0.283 | 0.526 | 1.381 | 1.228 | 1.195 | 0.67 | 0.975 | 1.381 | 0.956 | 1.804 | 1.026 | 0.543 | 1.256 | 1.275 | 1.3 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11386
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_Clustered
|
0.931
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.458
|
0.314
|
0.028
|
0.612
|
0.221
|
0.100
|
0.184
|
0.476
|
0.150
|
0.034
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010487
|
1.000
|
1.000
|
Hsc_gene_7330.t1
|
Hsc_gene_7330.t1
|
— |
Q8H185.1 Acireductone dioxygenase 4 [Arabidopsis thaliana]
|
KAF7632102.1 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0010309|GO:0016491|GO:0019509
|
GO:0005575_0.802|GO:0110165_0.800|GO:0005622_0.741|GO:0005737_0.723|GO:0008150_0.622|GO:0009987_0.563|GO:0005829_0.511
|
IPR004313+2-179_5-155_28-155+|IPR011051+1-164+|IPR014710+1-179+|IPR027496+2-166+
|
— |
PF03079+5-155+ARD/ARD'_family
|
G3DSA:2.60.120.10:FF:000099+1-179+1,2-dihydroxy-3-keto-5-methylthiopentene_dioxygenase
|
PTHR23418+2-179+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-181
|
4qgn_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.603
|
21153.030
|
5.362
|
-3.500
|
32.597
|
13.812
|
48.066
|
51.934
|
16.022
|
16.575
|
45.856
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
434.518
|
374.809
|
726.962
|
437.586
|
568.664
|
459.824
|
670.405
|
721.577
|
233.600
|
240.881
|
237.760
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.727
|
— |
-0.624
|
0.346
|
-0.292
|
0.556
|
0.549
|
— | — | — | — | — | — |
No JSON data available for plots.