Hg_chrom6_TN10mRNA_12076
Organism: Heterodera glycines Gene Locus: chr6:5256295-5260449 Feature type: polypeptideProtein Sequence
Length: 522
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.668 | 1.292 | 0.94 | 0.264 | 1.533 | 1.277 | 0.57 | 0.958 | 0.724 | 1.036 | 0.668 | 1.465 | 1.703 | 1.032 | 1.016 | 1.779 | 0.942 | 0.987 | 0.442 | 0.676 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11387
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.989
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.489
|
0.130
|
0.014
|
0.665
|
0.109
|
0.265
|
0.159
|
0.055
|
0.145
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010488
|
1.000
|
1.000
|
Hsc_gene_7329.t1
|
Hsc_gene_7329.t1
|
— |
P34379.1 Autophagy-related protein 13 homolog [Caenorhabditis elegans]
|
KAI1725404.1 autophagy-related protein 13 like protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000045|GO:0006914|GO:1990316
|
GO:0008150_0.952|GO:0009987_0.906|GO:0065007_0.865|GO:0050789_0.847|GO:0050794_0.835|GO:0005575_0.780|GO:0110165_0.776|GO:0008152_0.774|GO:0048518_0.760|GO:0044237_0.758|GO:0048522_0.749|GO:0005622_0.719|GO:0009056_0.697|GO:0044248_0.682|GO:0006914_0.679|GO:0061919_0.679|GO:0005737_0.640|GO:0019222_0.615|GO:0031323_0.610|GO:0008283_0.558|GO:0009894_0.555|GO:0042127_0.549|GO:0031329_0.542|GO:0010506_0.538|GO:0003674_0.527
|
IPR018731+95-206+|IPR036570+9-212+|IPR040182+11-209+
|
— |
PF10033+95-206+Autophagy-related_protein_13
|
— |
PTHR13430+11-209+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
270-451;519-522
|
2.000
|
1-269;452-518
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.567
|
58479.870
|
4.599
|
-21.000
|
25.670
|
10.920
|
54.406
|
45.594
|
11.303
|
14.368
|
52.107
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey60
|
1774.415
|
2786.125
|
2164.423
|
1597.916
|
1455.167
|
1283.750
|
1907.529
|
1945.714
|
1593.309
|
1640.351
|
1620.190
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.594
|
-0.939
|
-0.329
|
-0.167
|
-0.166
|
0.582
|
0.497
|
— | — | — | — | — | — |
No JSON data available for plots.