Hg_chrom6_TN10mRNA_12077
Organism: Heterodera glycines Gene Locus: chr6:5261923-5267598 Feature type: polypeptideProtein Sequence
Length: 1,064
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.688 | 1.792 | 1.042 | 0.713 | 1.128 | 1.374 | 0.358 | 1.316 | 1.086 | 1.118 | 0.926 | 1.216 | 1.175 | 0.958 | 0.94 | 1.813 | 1.094 | 0.484 | 0.723 | 0.636 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11388
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RPRR,KRKKR,WHGARTKDKHHREKGHRKGHHKKRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.977
|
0.034
|
0.004
|
0.104
|
0.024
|
0.017
|
0.012
|
0.011
|
0.053
|
0.024
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010489
|
1.000
|
1.000
|
Hsc_gene_7328.t1
|
Hsc_gene_7328.t1
|
— | — |
KAF7632099.1 DUF4211 domain-containing protein, partial [Meloidogyne graminicola]
|
No
|
-0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR025451+844-968+
|
— |
PF13926+844-968+Domain_of_unknown_function_(DUF4211)
|
— |
PTHR14689+25-1059+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-24;156-688
|
2.000
|
25-155;689-1064
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.778
|
119810.220
|
6.222
|
-5.000
|
25.846
|
9.962
|
58.271
|
41.729
|
13.346
|
12.500
|
51.974
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
1148.862
|
2607.385
|
1288.740
|
1016.467
|
954.095
|
934.859
|
1155.527
|
1277.445
|
1644.957
|
329.611
|
893.331
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.247
|
-1.496
|
-0.233
|
-0.123
|
— |
0.313
|
0.347
|
— | — | — | — | — | — |
No JSON data available for plots.