SCN Proteipedia

Hg_chrom6_TN10mRNA_12079

Organism: Heterodera glycines Gene Locus: chr6:5269097-5276412 Feature type: polypeptide

Protein Sequence

Length: 1,631

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.019	1.383	0.892	0.444	1.001	2.5	0.635	1.226	0.967	1.069	1.133	1.443	0.817	0.979	0.813	1.366	0.985	0.576	0.424	0.415	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11390	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Not_Clustered	0.714

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	cytoplasm\|nucleus	—	RKKAA,KKDSEQQHQNYKKKRLYK,RKNSSQTISNLQERVKRA	—	—	—	—	—	—	0.000	—	—	0.507	0.112	0.015	0.705	0.122	0.135	0.139	0.102	0.209	0.069

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000898	1.000	5.000	Hsc_gene_7327.t1;Hsc_gene_7327.t2;Hsc_gene_7327.t3;Hsc_gene_7327.t4;Hsc_gene_7327.t5	Hsc_gene_7327.t1;Hsc_gene_7327.t2;Hsc_gene_7327.t3;Hsc_gene_7327.t4;Hsc_gene_7327.t5	—	Q9VYQ8.1 Ubiquitin carboxyl-terminal hydrolase 7 [Drosophila melanogaster]	KAI1731898.1 MATH domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0008150_0.968\|GO:0009987_0.935\|GO:0065007_0.924\|GO:0050789_0.913\|GO:0003674_0.846\|GO:0005575_0.841\|GO:0110165_0.839\|GO:0005622_0.801\|GO:0043226_0.762\|GO:0050794_0.761\|GO:0016020_0.758\|GO:0043229_0.740\|GO:0003824_0.681\|GO:0140096_0.681\|GO:0016787_0.680\|GO:0043227_0.680\|GO:0008152_0.662\|GO:0008233_0.662\|GO:0043170_0.662\|GO:0004843_0.650\|GO:0008234_0.650\|GO:0019783_0.650\|GO:0101005_0.650\|GO:0043231_0.634\|GO:0005737_0.631\|GO:0005634_0.618\|GO:0065008_0.597\|GO:0016043_0.574\|GO:0071840_0.574\|GO:0031647_0.559\|GO:0050896_0.535\|GO:0009058_0.523\|GO:0009059_0.523\|GO:0010467_0.523\|GO:0044237_0.523\|GO:0044249_0.523\|GO:0044238_0.517	IPR002083+163-292_168-273_168-292+\|IPR008974+148-301+	SM00061+168-273+	PF22486+168-292+MATH_domain	—	PTHR47022+142-306+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-78;354-527;707-790;1086-1631	3.000	79-353;528-706;791-1085	4ysi_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.830	179960.480	8.293	29.000	24.831	7.357	56.101	43.899	13.918	10.914	50.705

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	paleturquoise	4584.788	5799.126	4749.144	3730.215	4076.024	4145.204	4069.838	3502.456	8671.155	2278.081	5017.970

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.517	-0.774	-0.240	0.096	—	—	-0.347	0.358	1.810	—	—	—	—

No JSON data available for plots.

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