Hg_chrom6_TN10mRNA_12080
Organism: Heterodera glycines Gene Locus: chr6:5277255-5280021 Feature type: polypeptideProtein Sequence
Length: 433
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.671 | 0.967 | 0.924 | 0.717 | 0.616 | 0.888 | 0.687 | 1.963 | 1.18 | 1.311 | 0.56 | 2.989 | 2.309 | 0.622 | 1.225 | 0.759 | 0.681 | 1.12 | 2.309 | 1.426 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11391
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
RGGGRKRRK,RKPPFDGSNPIARGGGRKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.029
|
0.148
|
0.006
|
0.116
|
0.354
|
0.341
|
0.287
|
0.011
|
0.605
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010490
|
1.000
|
1.000
|
Hsc_gene_7326.t2
|
Hsc_gene_7326.t1;Hsc_gene_7326.t2;Hsc_gene_7326.t3
|
— |
Q03412.1 Innexin unc-7 [Caenorhabditis elegans]
|
XP_024499961.1 Innexin family-containing protein [Strongyloides ratti];CEF60752.1 Innexin family-containing protein [Strongyloides ratti]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.865|GO:0110165_0.865|GO:0008150_0.843|GO:0009987_0.710|GO:0030054_0.599|GO:0003674_0.596|GO:0006810_0.541|GO:0016020_0.541|GO:0051179_0.541|GO:0051234_0.541|GO:0005911_0.524|GO:0070161_0.524|GO:0071944_0.513|GO:0005886_0.512|GO:0005921_0.502
|
IPR000990+1-392_14-372_19-366_42-53_70-79_99-121_192-206_240-249_264-280+
|
— |
PF00876+19-366+Innexin
|
— |
PTHR11893+1-392+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-433
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.628
|
50908.210
|
8.230
|
12.500
|
22.402
|
20.092
|
39.492
|
60.508
|
13.626
|
8.776
|
42.956
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
brown
|
583.965
|
986.847
|
1954.196
|
642.029
|
276.512
|
376.408
|
399.242
|
1301.939
|
380.142
|
43.301
|
187.661
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.756
|
-0.758
|
-1.497
|
-1.246
|
0.460
|
— |
1.690
|
-1.565
|
— | — | — | — | — |
No JSON data available for plots.