SCN Proteipedia

Hg_chrom6_TN10mRNA_12083

Organism: Heterodera glycines Gene Locus: chr6:5288895-5294509 Feature type: polypeptide

Protein Sequence

Length: 614

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.871	0.606	0.977	0.449	1.384	0.835	0.95	0.977	1.412	0.99	0.888	2.203	1.086	0.908	1.03	0.977	0.934	1.11	0.752	1.15	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11394	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	6-Not_Clustered	0.416

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.401	0.288	0.071	0.571	0.187	0.401	0.210	0.104	0.208	0.123

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010492	1.000	1.000	Hsc_gene_7320.t1	Hsc_gene_7320.t1;Hsc_gene_7322.t1	—	Q9XW92.3 V-type proton ATPase catalytic subunit A [Caenorhabditis elegans]	RCN47916.1 V-type ATPase, A subunit [Ancylostoma caninum]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005524\|GO:0016887\|GO:0033180\|GO:0046034\|GO:0046961\|GO:1902600	GO:0008150_0.870\|GO:0005575_0.807\|GO:0110165_0.807\|GO:0005622_0.734\|GO:0016020_0.681\|GO:0009987_0.672\|GO:0005737_0.637\|GO:0043226_0.609\|GO:0043229_0.578\|GO:0043227_0.546\|GO:0043231_0.526\|GO:0003674_0.525	IPR000194+226-451+\|IPR004100+17-79+\|IPR005725+13-605+\|IPR020003+442-451+\|IPR022878+8-613_12-611+\|IPR023366+13-82+\|IPR024034+452-606+\|IPR027417+84-450_192-456+\|IPR031686+95-217+\|IPR036121+9-82+	—	PF00006+226-451+ATP_synthase_alpha/beta_family,_nucleotide-binding_domain\|PF02874+17-79+ATP_synthase_alpha/beta_family,_beta-barrel_domain\|PF16886+95-217+ATPsynthase_alpha/beta_subunit_N-term_extension\|PF22919+459-558+C-terminal_domain_of_V_and_A_type_ATP_synthase	G3DSA:1.10.1140.10:FF:000002+452-605+V-type_proton_ATPase_catalytic_subunit_A\|G3DSA:2.40.30.20:FF:000002+13-82+V-type_proton_ATPase_catalytic_subunit_A\|G3DSA:2.40.50.100:FF:000008+127-199+V-type_proton_ATPase_catalytic_subunit_A\|G3DSA:3.40.50.300:FF:000052+187-450+V-type_proton_ATPase_catalytic_subunit_A	PTHR43607+8-613+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-2	1.000	3-614	9brc_C	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.494	68343.030	5.182	-11.000	26.547	10.749	44.951	55.049	12.866	13.681	49.349

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	brown	3921.759	2715.584	5958.322	5422.467	6841.442	4745.718	3982.789	4798.393	2724.912	2189.745	2419.102

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.906	0.861	—	0.303	-0.513	-0.243	—	—	—	—	—	—	—

No JSON data available for plots.

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