Hg_chrom6_TN10mRNA_12086
Organism: Heterodera glycines Gene Locus: chr6:5299105-5307897 Feature type: polypeptideProtein Sequence
Length: 1,440
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.654 | 1.179 | 0.783 | 1.604 | 1.181 | 0.926 | 0.736 | 1.181 | 0.802 | 2.027 | 0.589 | 0.817 | 1.1 | 1.229 | 1.772 | 1.339 | 0.524 | 0.684 | 0.748 | 0.041 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11397
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
chloroplast
|
RKRR,RWLKRLK,PLQKRKR,KKEEKQHNRKRTETKREQR,KEEKQHNRKRTETKREQREGRKCSRG
|
— | — |
4-41
|
0.981
|
— |
0.731
|
0.017
|
0.000
|
— |
0.212
|
0.161
|
0.011
|
0.282
|
0.168
|
0.129
|
0.158
|
0.019
|
0.382
|
0.593
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010495
|
1.000
|
1.000
|
Hsc_gene_7317.t1
|
Hsc_gene_7317.t1
|
— |
G5EFX6.1 Slit homolog 1 protein [Caenorhabditis elegans]
|
KAI6235890.1 Slit-like protein 2 protein [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.914|GO:0032501_0.804|GO:0005575_0.798|GO:0110165_0.798|GO:0009987_0.781|GO:0032502_0.747|GO:0048856_0.747|GO:0003674_0.742|GO:0007275_0.719|GO:0005488_0.705|GO:0065007_0.691|GO:0048731_0.684|GO:0050789_0.682|GO:0050794_0.664|GO:0050896_0.662|GO:0005515_0.627|GO:0071840_0.614|GO:0016043_0.611|GO:0007399_0.605|GO:0048869_0.603|GO:0030154_0.601|GO:0016020_0.591|GO:0048468_0.572|GO:0009653_0.554|GO:0022008_0.545|GO:0048699_0.530|GO:0030182_0.523|GO:0030030_0.514|GO:0120036_0.514|GO:0048666_0.510|GO:0071944_0.505
|
IPR000372+52-84_296-333_528-560_755-801+|IPR000483+234-278_461-510_685-741_904-953+|IPR000742+969-1005_970-1005_993-1004+|IPR001611+129-150_129-188_201-222_330-389_403-463_427-448_581-642_582-603_800-857_822-843+|IPR001791+1108-1295_1116-1271_1132-1273_1141-1273+|IPR003591+83-102_103-126_127-150_152-174_177-198_199-222_327-351_352-375_376-399_403-424_425-448_580-603_604-627_650-673_800-819_820-843_844-867_868-891+|IPR013320+1095-1283+|IPR032675+49-168_169-281_294-516_526-743_754-957+|IPR050541+527-751+
|
SM00013+52-84_296-333_528-560_755-801+|SM00082+234-278_461-510_685-741_904-953+|SM00181+970-1005+|SM00282+1132-1273+|SM00364+127-146_175-194_200-218_376-395_604-623_820-839+|SM00365+103-126_127-149_151-177_199-220_352-373_425-446_580-612_796-817_868-889+|SM00369+83-102_103-126_127-150_152-174_177-198_199-222_327-351_352-375_376-399_403-424_425-448_580-603_604-627_650-673_800-819_820-843_844-867_868-891+
|
PF02210+1141-1273+Laminin_G_domain|PF13855+129-188_330-389_403-463_581-642_800-857+Leucine_rich_repeat
|
G3DSA:3.80.10.10:FF:000002+294-517+Slit_guidance_ligand_2|G3DSA:3.80.10.10:FF:000032+50-163+Slit_homolog_2_(Drosophila)|G3DSA:3.80.10.10:FF:001360+796-953+Uncharacterized_protein
|
PTHR24369+527-751+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1027-1083
|
2.000
|
1-1026;1084-1440
|
2v9t_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.879
|
160482.670
|
8.034
|
34.000
|
26.319
|
7.431
|
47.569
|
52.431
|
14.931
|
11.389
|
49.306
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
817.374
|
1265.281
|
1129.400
|
1556.478
|
1070.813
|
1183.519
|
406.581
|
752.261
|
36.859
|
786.743
|
465.364
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.394
|
0.162
|
0.572
|
-0.572
|
— |
-1.532
|
-0.760
|
-0.745
|
-3.115
|
5.605
|
— | — | — |