Hg_chrom6_TN10mRNA_12092
Organism: Heterodera glycines Gene Locus: chr6:5321121-5325192 Feature type: polypeptideProtein Sequence
Length: 974
(Signal peptide: 1-46)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.943 | 0.931 | 0.765 | 0.177 | 1.608 | 1.053 | 0.697 | 0.873 | 0.935 | 1.429 | 0.638 | 1.691 | 0.713 | 1.106 | 1.655 | 1.613 | 0.926 | 0.793 | 0.632 | 0.151 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11402
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide
|
extracellular
|
mitochondria
|
KRPR,RPRR,RKQTEIGREKREQEKQRDK,AFSRIKRWMKRKKGNEWKAKRIGGKTEDGRRESEGKAK
|
40-61
|
0.931
|
— | — |
1-46
|
0.603
|
0.772
|
1.000
|
1.000
|
0.207
|
0.075
|
0.089
|
0.297
|
0.241
|
0.133
|
0.220
|
0.216
|
0.506
|
0.512
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004389
|
2.000
|
1.000
|
Hsc_gene_7313.t1
|
Hsc_gene_7313.t1
|
— | — |
KAI1731916.1 ATP12 chaperone protein [Ditylenchus destructor]
|
No
|
-0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-101;500-898;940-974
|
2.000
|
102-499;899-939
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.749
|
107344.040
|
5.940
|
-6.500
|
27.926
|
5.647
|
52.977
|
47.023
|
14.066
|
13.860
|
50.616
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
194.431
|
268.673
|
151.776
|
73.996
|
47.498
|
77.708
|
160.903
|
106.623
|
45.405
|
483.892
|
295.969
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.052
|
-1.997
|
-0.928
|
-0.669
|
0.723
|
1.064
|
— |
0.739
|
-3.503
|
— | — | — | — |