SCN Proteipedia

Hg_chrom6_TN10mRNA_12095

Organism: Heterodera glycines Gene Locus: chr6:5329553-5330586 Feature type: polypeptide

Protein Sequence

Length: 201

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.579	1.388	0.633	0.686	1.41	1.914	0.592	1.493	0.442	1.008	0.603	0.585	1.52	1.626	2.031	1.493	0.734	0.452	1.148	0.585	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11405	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	3-Not_described	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	PTQKRQR	28-50	0.999	90-110	0.990	—	—	0.000	—	—	0.840	0.202	0.008	0.418	0.061	0.032	0.042	0.005	0.038	0.051

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010501	1.000	1.000	Hsc_gene_7310.t1	Hsc_gene_7310.t1	—	Q93246.1 Homeobox protein dsc-1 [Caenorhabditis elegans]	KAF8354160.1 dsc-1, partial [Pristionchus pacificus]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000981\|GO:0003677\|GO:0006355	GO:0008150_0.845\|GO:0009987_0.761\|GO:0032501_0.691\|GO:0065007_0.659\|GO:0050789_0.656\|GO:0050794_0.651\|GO:0005575_0.608\|GO:0003674_0.605\|GO:0005488_0.605\|GO:0032502_0.590\|GO:0048856_0.590\|GO:0110165_0.582\|GO:0007275_0.575\|GO:0008152_0.572\|GO:0019222_0.572\|GO:0031323_0.572\|GO:0044237_0.572\|GO:0009058_0.562\|GO:0009059_0.562\|GO:0010467_0.562\|GO:0043170_0.562\|GO:0044249_0.562\|GO:0060255_0.558\|GO:0009889_0.557\|GO:0031326_0.557\|GO:0005622_0.553\|GO:0010556_0.550\|GO:0003676_0.548\|GO:0097159_0.548\|GO:0010468_0.544\|GO:0043226_0.540\|GO:0043229_0.540\|GO:0048731_0.538\|GO:0044238_0.536\|GO:0080090_0.536\|GO:0006139_0.527\|GO:0016070_0.527\|GO:0032774_0.527\|GO:0034654_0.527\|GO:0090304_0.527\|GO:0141187_0.527\|GO:0003677_0.518\|GO:0006351_0.516\|GO:0019219_0.513\|GO:0051252_0.511\|GO:2001141_0.509\|GO:0043565_0.508\|GO:0006355_0.506	IPR001356+32-92_34-96_35-91_40-91+\|IPR009057+31-95+\|IPR017970+67-90+\|IPR050649+19-171+	SM00389+34-96+	PF00046+35-91+Homeodomain	—	PTHR24329+19-171+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	96-201	1.000	1-95	3a01_F	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.946	23202.720	8.850	7.000	28.856	11.940	57.214	42.786	16.915	11.940	47.761

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	tan	84.990	72.913	179.052	106.050	59.944	41.748	130.894	105.155	117.775	22.591	63.384

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.065	0.404	-0.645	-0.854	-0.508	1.662	1.231	0.459	—	—	—	—	—

No JSON data available for plots.

Back to Browser