Hg_chrom6_TN10mRNA_12098
Organism: Heterodera glycines Gene Locus: chr6:5341711-5344035 Feature type: polypeptideProtein Sequence
Length: 620
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.844 | 0.675 | 0.821 | 0.779 | 0.914 | 1.199 | 0.672 | 1.129 | 0.789 | 1.351 | 0.538 | 0.949 | 1.03 | 1.861 | 1.415 | 1.866 | 0.714 | 0.953 | 1.117 | 0.237 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11408
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
KRPIGGESVGRRTNK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.219
|
0.036
|
0.015
|
0.328
|
0.356
|
0.237
|
0.306
|
0.266
|
0.681
|
0.047
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010504
|
1.000
|
1.000
|
Hsc_gene_7307.t2
|
Hsc_gene_7307.t1;Hsc_gene_7307.t2
|
— |
P18461.1 Fibroblast growth factor receptor 2 [Gallus gallus]
|
KAI1725434.1 immunoglobulin i-set domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.906|GO:0009987_0.854|GO:0005575_0.808|GO:0110165_0.804|GO:0065007_0.793|GO:0050789_0.777|GO:0050794_0.733|GO:0003674_0.695|GO:0016020_0.628|GO:0005488_0.627|GO:0071944_0.618|GO:0005622_0.597|GO:0050896_0.596|GO:0032502_0.582|GO:0048856_0.582|GO:0005515_0.573|GO:0032501_0.570|GO:0051716_0.558|GO:0007154_0.522|GO:0023052_0.522|GO:0005886_0.519|GO:0007165_0.504
|
IPR003598+12-87_141-204_270-367+|IPR003599+6-98_135-215_264-379+|IPR007110+1-98_133-213_254-377+|IPR013098+36-97+|IPR013151+339-368+|IPR013783+3-100_115-214_253-380+|IPR036179+18-100_136-214_266-383+
|
SM00408+12-87_141-204_270-367+|SM00409+6-98_135-215_264-379+
|
PF00047+339-368+Immunoglobulin_domain|PF07679+36-97+Immunoglobulin_I-set_domain|PF13895+136-210+Immunoglobulin_domain
|
— |
PTHR10075+146-385+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3;105-152;224-274;506-620
|
3.000
|
4-104;153-223;275-505
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.928
|
67665.780
|
7.894
|
10.000
|
22.742
|
8.226
|
47.742
|
52.258
|
12.742
|
10.000
|
55.968
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
orange
|
654.278
|
1098.145
|
1096.530
|
721.000
|
321.251
|
339.779
|
1190.675
|
701.796
|
472.993
|
456.779
|
463.728
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.232
|
-0.744
|
-0.495
|
-1.198
|
— |
1.819
|
0.945
|
0.904
|
— | — | — | — | — |
No JSON data available for plots.