Hg_chrom6_TN10mRNA_12103
Organism: Heterodera glycines Gene Locus: chr6:5364475-5367120 Feature type: polypeptideProtein Sequence
Length: 685
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.917 | 1.188 | 0.717 | 0.705 | 1.071 | 1.722 | 0.782 | 2.19 | 1.006 | 0.513 | 0.774 | 1.803 | 0.973 | 1.291 | 0.924 | 1.898 | 1.221 | 0.464 | 0.337 | 0.429 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11413
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
PKKAK,RRNKRKT
|
23-43
|
0.970
|
19-39
|
0.991
|
— | — |
0.000
|
— | — |
0.959
|
0.052
|
0.009
|
0.294
|
0.021
|
0.020
|
0.016
|
0.016
|
0.033
|
0.021
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003814
|
2.000
|
1.000
|
Hsc_gene_7303.t1
|
Hsc_gene_7303.t1
|
— |
H2KYH4.1 Zinc finger protein ham-2 [Caenorhabditis elegans]
|
KAH7732059.1 CBN-HAM-2 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.891|GO:0009987_0.847|GO:0065007_0.843|GO:0050789_0.836|GO:0050794_0.828|GO:0005575_0.710|GO:0110165_0.696|GO:0005622_0.651|GO:0032502_0.647|GO:0048856_0.647|GO:0032501_0.634|GO:0007275_0.618|GO:0043226_0.617|GO:0016020_0.615|GO:0043229_0.598|GO:0030154_0.586|GO:0048869_0.586|GO:0043227_0.549|GO:0043231_0.540|GO:0005634_0.527|GO:0048731_0.523
|
IPR013087+16-39_16-44_18-39_43-66_43-71_45-66_72-92_72-100+|IPR036236+15-61+
|
SM00355+16-39_43-66_72-92+
|
PF00096+16-39+Zinc_finger,_C2H2_type
|
— |
PTHR24408+15-101+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
93-278;355-685
|
2.000
|
1-92;279-354
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.897
|
74543.210
|
7.119
|
10.000
|
24.380
|
9.781
|
56.934
|
43.066
|
14.015
|
10.365
|
56.058
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
979.398
|
1732.916
|
1315.890
|
921.530
|
1283.913
|
1793.504
|
2148.205
|
1334.426
|
111.476
|
252.365
|
191.984
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.626
|
-1.048
|
-0.406
|
0.447
|
0.497
|
0.271
|
-0.532
|
0.831
|
— | — | — | — | — |
No JSON data available for plots.