Hg_chrom6_TN10mRNA_12104
Organism: Heterodera glycines Gene Locus: chr6:5367180-5369561 Feature type: polypeptideProtein Sequence
Length: 346
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.807 | 2.487 | 0.578 | 0.299 | 0.915 | 1.704 | 0.344 | 1.301 | 0.642 | 1.484 | 1.095 | 1.36 | 0.963 | 1.89 | 1.062 | 1.032 | 0.663 | 0.876 | 0.222 | 0.425 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11414
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
LGEV,KKVQMADELMKRALR,KRALRPYFRRRRITKDEYKEIMIKGVAKLKKRHSLK
|
— | — |
58-82
|
0.978
|
— | — |
0.000
|
— | — |
0.713
|
0.091
|
0.011
|
0.454
|
0.036
|
0.019
|
0.039
|
0.011
|
0.062
|
0.045
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010506
|
1.000
|
1.000
|
Hsc_gene_7302.t1
|
Hsc_gene_7302.t1;Hsc_gene_7302.t2
|
— | — |
KAI1725451.1 PHD-finger domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR042841+178-342+
|
— | — | — |
PTHR47013+178-342+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-77;167-291
|
2.000
|
78-166;292-346
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.958
|
38868.310
|
10.290
|
17.500
|
23.699
|
7.803
|
52.312
|
47.688
|
15.029
|
8.671
|
51.445
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellowgreen
|
1271.068
|
1223.603
|
1634.578
|
1196.185
|
936.137
|
1101.486
|
651.379
|
1692.164
|
802.552
|
1795.684
|
1370.056
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.189
|
-0.170
|
-0.342
|
-0.386
|
0.249
|
-0.749
|
0.516
|
-1.236
|
— | — | — | — | — |
No JSON data available for plots.