Hg_chrom6_TN10mRNA_12105
Organism: Heterodera glycines Gene Locus: chr6:5375138-5377797 Feature type: polypeptideProtein Sequence
Length: 327
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.676 | 1.138 | 0.945 | 0.844 | 0.968 | 0.784 | 0.947 | 1.682 | 0.815 | 1.198 | 0.834 | 2.159 | 1.189 | 0.529 | 1.123 | 1.005 | 1.053 | 1.668 | 0.47 | 0.63 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11415
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.346
|
0.170
|
0.023
|
0.650
|
0.191
|
0.239
|
0.157
|
0.003
|
0.288
|
0.089
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010507
|
1.000
|
1.000
|
Hsc_gene_7300.t2
|
Hsc_gene_7300.t1;Hsc_gene_7300.t2
|
— |
Q3ZBA8.1 Protein NDRG2 [Bos taurus]
|
KAI1725449.1 ndr family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.874|GO:0005575_0.741|GO:0110165_0.740|GO:0005622_0.644|GO:0005737_0.587|GO:0016020_0.562|GO:0065007_0.558|GO:0050789_0.534|GO:0009987_0.524
|
IPR004142+10-308_11-285+|IPR029058+2-281_29-261+
|
— |
PF03096+11-285+Ndr_family
|
— |
PTHR11034+10-308+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
294-327
|
1.000
|
1-293
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.709
|
36178.510
|
7.444
|
5.500
|
25.382
|
10.398
|
46.789
|
53.211
|
14.373
|
11.009
|
53.517
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
955.917
|
4260.874
|
2564.714
|
433.068
|
330.668
|
378.053
|
386.463
|
1881.144
|
317.762
|
105.697
|
196.582
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.961
|
-3.436
|
-2.458
|
-0.420
|
0.208
|
— |
2.206
|
-2.139
|
— | — | — | — | — |
No JSON data available for plots.