Hg_chrom6_TN10mRNA_12109
Organism: Heterodera glycines Gene Locus: chr6:5389868-5394847 Feature type: polypeptideProtein Sequence
Length: 914
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.751 | 1.323 | 0.995 | 0.83 | 0.802 | 1.094 | 0.612 | 1.368 | 1.216 | 1.449 | 0.63 | 0.708 | 1.672 | 0.905 | 1.183 | 1.516 | 0.879 | 1.061 | 0.337 | 0.451 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11419
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.907
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KKSIRQSFRKRRRPN,VKKSIRQSFRKRRRP,KKPAIVQLRSRLRRARS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.387
|
0.217
|
0.030
|
0.558
|
0.138
|
0.474
|
0.343
|
0.011
|
0.196
|
0.055
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010511
|
1.000
|
1.000
|
Hsc_gene_7296.t1
|
Hsc_gene_7296.t1
|
— |
Q7SZE3.1 LLGL scribble cell polarity complex component 2 [Danio rerio]
|
KAI1725443.1 LLGL2 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.957|GO:0009987_0.910|GO:0005575_0.854|GO:0110165_0.849|GO:0005622_0.793|GO:0043226_0.716|GO:0016020_0.702|GO:0043229_0.629|GO:0005737_0.624|GO:0071944_0.588|GO:0003674_0.562|GO:0043227_0.540|GO:0032501_0.536|GO:0051179_0.536|GO:0032502_0.531|GO:0048856_0.531|GO:0065007_0.526|GO:0051234_0.516|GO:0005886_0.513|GO:0050789_0.513
|
IPR000664+18-36_311-331_408-431_674-693+|IPR013577+259-334+|IPR015943+22-428+|IPR036322+22-426_411-892+
|
— |
PF08366+259-334+LLGL2
|
— |
PTHR10241+22-909+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-914
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.793
|
101341.220
|
7.183
|
9.500
|
22.976
|
10.722
|
48.906
|
51.094
|
12.691
|
10.284
|
52.845
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
orange
|
1014.654
|
1100.810
|
1038.924
|
948.664
|
1299.061
|
1207.033
|
1551.997
|
1135.806
|
740.347
|
777.991
|
761.858
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.313
|
-0.352
|
— |
0.422
|
— |
0.373
|
— |
0.593
|
— | — | — | — | — |
No JSON data available for plots.